Experiment: Stool_Day2_Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0317 and BT0318 are separated by 19 nucleotides BT0318 and BT0319 are separated by 8 nucleotides BT0319 and BT0320 are separated by 146 nucleotides
BT0317: BT0317 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 382,145 to 385,333
BT0317
BT0318: BT0318 - hypothetical protein (NCBI ptt file), at 385,353 to 386,567
BT0318
BT0319: BT0319 - hypothetical protein (NCBI ptt file), at 386,576 to 386,947
BT0319
BT0320: BT0320 - hypothetical protein (NCBI ptt file), at 387,094 to 387,897
BT0320
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 384.512 kb on - strand, within BT0317 at 384.535 kb on + strand, within BT0317 at 384.536 kb on - strand, within BT0317 at 384.614 kb on - strand, within BT0317 at 384.643 kb on + strand, within BT0317 at 384.644 kb on - strand, within BT0317 at 384.661 kb on + strand, within BT0317 at 384.662 kb on - strand, within BT0317 at 384.662 kb on - strand, within BT0317 at 384.688 kb on - strand, within BT0317 at 384.790 kb on + strand at 384.791 kb on - strand, within BT0317 at 384.824 kb on + strand, within BT0317 at 384.902 kb on + strand, within BT0317 at 384.979 kb on - strand, within BT0317 at 384.991 kb on + strand, within BT0317 at 385.048 kb on + strand at 385.083 kb on - strand at 385.162 kb on + strand at 385.162 kb on + strand at 385.164 kb on + strand at 385.207 kb on + strand at 385.208 kb on - strand at 385.251 kb on - strand at 385.318 kb on - strand at 385.325 kb on - strand at 385.344 kb on - strand at 385.370 kb on - strand at 385.371 kb on + strand at 385.376 kb on - strand at 385.445 kb on + strand at 385.475 kb on + strand, within BT0318 at 385.507 kb on + strand, within BT0318 at 385.564 kb on + strand, within BT0318 at 385.571 kb on + strand, within BT0318 at 385.607 kb on + strand, within BT0318 at 385.608 kb on - strand, within BT0318 at 385.623 kb on + strand, within BT0318 at 385.624 kb on - strand, within BT0318 at 385.650 kb on + strand, within BT0318 at 385.758 kb on + strand, within BT0318 at 385.758 kb on + strand, within BT0318 at 385.759 kb on - strand, within BT0318 at 385.760 kb on + strand, within BT0318 at 385.760 kb on + strand, within BT0318 at 385.934 kb on + strand, within BT0318 at 385.934 kb on + strand, within BT0318 at 385.934 kb on + strand, within BT0318 at 385.959 kb on + strand, within BT0318 at 386.036 kb on - strand, within BT0318 at 386.062 kb on + strand, within BT0318 at 386.063 kb on - strand, within BT0318 at 386.067 kb on - strand, within BT0318 at 386.123 kb on + strand, within BT0318 at 386.123 kb on + strand, within BT0318 at 386.186 kb on + strand, within BT0318 at 386.219 kb on - strand, within BT0318 at 386.343 kb on - strand, within BT0318 at 386.343 kb on - strand, within BT0318 at 386.388 kb on - strand, within BT0318 at 386.401 kb on - strand, within BT0318 at 386.424 kb on + strand, within BT0318 at 386.449 kb on - strand at 386.472 kb on - strand at 386.497 kb on + strand at 386.617 kb on + strand, within BT0319 at 386.703 kb on - strand, within BT0319 at 386.713 kb on + strand, within BT0319 at 386.880 kb on - strand, within BT0319 at 386.959 kb on - strand at 387.054 kb on - strand at 387.061 kb on + strand at 387.238 kb on + strand, within BT0320 at 387.436 kb on + strand, within BT0320 at 387.437 kb on - strand, within BT0320
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day2_Mouse2 remove 384,512 - BT0317 0.74 +0.3 384,535 + BT0317 0.75 -0.5 384,536 - BT0317 0.75 +0.6 384,614 - BT0317 0.77 -0.4 384,643 + BT0317 0.78 +0.2 384,644 - BT0317 0.78 -0.4 384,661 + BT0317 0.79 -0.4 384,662 - BT0317 0.79 +0.6 384,662 - BT0317 0.79 -3.0 384,688 - BT0317 0.80 +0.0 384,790 + -0.4 384,791 - BT0317 0.83 -0.8 384,824 + BT0317 0.84 -1.4 384,902 + BT0317 0.86 -0.7 384,979 - BT0317 0.89 -1.0 384,991 + BT0317 0.89 -1.5 385,048 + -0.5 385,083 - +0.6 385,162 + -1.3 385,162 + -1.4 385,164 + +0.6 385,207 + +0.6 385,208 - -0.6 385,251 - -0.4 385,318 - +0.6 385,325 - -1.3 385,344 - -0.2 385,370 - -0.1 385,371 + +2.2 385,376 - +0.6 385,445 + +1.6 385,475 + BT0318 0.10 -0.4 385,507 + BT0318 0.13 -2.5 385,564 + BT0318 0.17 -0.4 385,571 + BT0318 0.18 +0.0 385,607 + BT0318 0.21 +0.6 385,608 - BT0318 0.21 +0.6 385,623 + BT0318 0.22 -0.4 385,624 - BT0318 0.22 -0.7 385,650 + BT0318 0.24 -1.5 385,758 + BT0318 0.33 +0.6 385,758 + BT0318 0.33 +0.0 385,759 - BT0318 0.33 -1.5 385,760 + BT0318 0.33 +0.2 385,760 + BT0318 0.33 -1.4 385,934 + BT0318 0.48 -1.2 385,934 + BT0318 0.48 -1.2 385,934 + BT0318 0.48 -1.1 385,959 + BT0318 0.50 -3.2 386,036 - BT0318 0.56 -1.4 386,062 + BT0318 0.58 -1.0 386,063 - BT0318 0.58 -1.0 386,067 - BT0318 0.59 -2.4 386,123 + BT0318 0.63 -2.6 386,123 + BT0318 0.63 -0.4 386,186 + BT0318 0.69 -1.0 386,219 - BT0318 0.71 -1.0 386,343 - BT0318 0.81 +0.6 386,343 - BT0318 0.81 -0.4 386,388 - BT0318 0.85 -1.7 386,401 - BT0318 0.86 -1.4 386,424 + BT0318 0.88 -1.4 386,449 - -0.4 386,472 - -0.1 386,497 + -1.4 386,617 + BT0319 0.11 -0.4 386,703 - BT0319 0.34 -0.4 386,713 + BT0319 0.37 +0.4 386,880 - BT0319 0.82 -0.8 386,959 - -0.8 387,054 - -1.7 387,061 + -2.2 387,238 + BT0320 0.18 -2.6 387,436 + BT0320 0.43 -0.4 387,437 - BT0320 0.43 +0.0
Or see this region's nucleotide sequence