Experiment: Stool_Day1_Mouse20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0252 and BT0253 are separated by 113 nucleotides BT0253 and BT0254 are separated by 441 nucleotides
BT0252: BT0252 - transcription-repair coupling factor (NCBI ptt file), at 277,801 to 281,184
BT0252
BT0253: BT0253 - hypothetical protein (NCBI ptt file), at 281,298 to 282,143
BT0253
BT0254: BT0254 - putative Fe-S oxidoreductase (NCBI ptt file), at 282,585 to 284,447
BT0254
Position (kb) 281
282
283 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 280.530 kb on - strand, within BT0252 at 280.756 kb on + strand, within BT0252 at 280.757 kb on - strand, within BT0252 at 280.757 kb on - strand, within BT0252 at 280.963 kb on - strand at 281.049 kb on + strand at 281.092 kb on - strand at 281.112 kb on + strand at 281.113 kb on - strand at 281.150 kb on + strand at 281.182 kb on + strand at 281.243 kb on + strand at 281.255 kb on + strand at 281.366 kb on + strand at 281.415 kb on - strand, within BT0253 at 281.424 kb on + strand, within BT0253 at 281.425 kb on - strand, within BT0253 at 281.431 kb on - strand, within BT0253 at 281.483 kb on - strand, within BT0253 at 281.543 kb on + strand, within BT0253 at 281.559 kb on + strand, within BT0253 at 281.560 kb on - strand, within BT0253 at 281.568 kb on + strand, within BT0253 at 281.569 kb on - strand, within BT0253 at 281.629 kb on + strand, within BT0253 at 281.764 kb on - strand, within BT0253 at 281.778 kb on - strand, within BT0253 at 281.832 kb on - strand, within BT0253 at 281.885 kb on + strand, within BT0253 at 281.975 kb on + strand, within BT0253 at 281.992 kb on + strand, within BT0253 at 282.014 kb on + strand, within BT0253 at 282.036 kb on - strand, within BT0253 at 282.068 kb on - strand at 282.147 kb on - strand at 282.193 kb on - strand at 282.193 kb on - strand at 282.286 kb on + strand at 282.314 kb on + strand at 282.327 kb on + strand at 282.327 kb on + strand at 282.350 kb on - strand at 282.448 kb on - strand at 282.474 kb on - strand at 282.481 kb on + strand at 282.482 kb on - strand at 282.489 kb on + strand at 282.537 kb on - strand at 282.538 kb on + strand at 282.538 kb on + strand at 282.643 kb on - strand at 282.679 kb on + strand at 282.749 kb on + strand at 282.749 kb on + strand at 282.807 kb on - strand, within BT0254 at 282.903 kb on - strand, within BT0254 at 282.912 kb on + strand, within BT0254 at 282.915 kb on - strand, within BT0254 at 282.928 kb on - strand, within BT0254 at 283.084 kb on + strand at 283.084 kb on + strand, within BT0254 at 283.134 kb on + strand, within BT0254 at 283.135 kb on - strand, within BT0254 at 283.135 kb on - strand, within BT0254
Per-strain Table
Position Strand Gene LocusTag Fraction Stool_Day1_Mouse20 remove 280,530 - BT0252 0.81 -0.9 280,756 + BT0252 0.87 +0.4 280,757 - BT0252 0.87 +0.4 280,757 - BT0252 0.87 -1.0 280,963 - -2.9 281,049 + +0.1 281,092 - -0.5 281,112 + +0.4 281,113 - +0.4 281,150 + +0.8 281,182 + -1.9 281,243 + +0.4 281,255 + +1.0 281,366 + -0.6 281,415 - BT0253 0.14 +0.1 281,424 + BT0253 0.15 -2.4 281,425 - BT0253 0.15 -0.6 281,431 - BT0253 0.16 -2.4 281,483 - BT0253 0.22 -2.6 281,543 + BT0253 0.29 -1.2 281,559 + BT0253 0.31 -1.6 281,560 - BT0253 0.31 -0.6 281,568 + BT0253 0.32 -2.8 281,569 - BT0253 0.32 -1.6 281,629 + BT0253 0.39 -1.6 281,764 - BT0253 0.55 -3.2 281,778 - BT0253 0.57 -1.6 281,832 - BT0253 0.63 -2.9 281,885 + BT0253 0.69 +0.0 281,975 + BT0253 0.80 -1.6 281,992 + BT0253 0.82 -0.9 282,014 + BT0253 0.85 -0.4 282,036 - BT0253 0.87 -1.9 282,068 - -1.7 282,147 - -1.2 282,193 - -0.6 282,193 - -1.6 282,286 + -1.3 282,314 + -1.6 282,327 + +0.4 282,327 + +0.4 282,350 - -0.6 282,448 - +0.4 282,474 - -1.2 282,481 + -1.6 282,482 - -0.8 282,489 + +0.8 282,537 - -1.0 282,538 + -1.2 282,538 + -0.4 282,643 - -2.4 282,679 + -0.9 282,749 + +0.4 282,749 + -2.4 282,807 - BT0254 0.12 -1.7 282,903 - BT0254 0.17 -1.6 282,912 + BT0254 0.18 -1.5 282,915 - BT0254 0.18 -1.7 282,928 - BT0254 0.18 -0.6 283,084 + -0.6 283,084 + BT0254 0.27 +0.4 283,134 + BT0254 0.29 +1.0 283,135 - BT0254 0.30 -1.6 283,135 - BT0254 0.30 -1.3
Or see this region's nucleotide sequence