Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3097

Experiment: Stool_Day1_Mouse8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Stool_Day1_Mouse8
3,933,755	+		BT3096	0.61	-1.6
3,933,842	+		BT3096	0.65	-2.0
3,933,852	+		BT3096	0.65	+1.6
3,933,908	+		BT3096	0.68	-0.7
3,933,920	+		BT3096	0.68	-1.3
3,933,921	-		BT3096	0.68	-2.7
3,933,941	+		BT3096	0.69	-2.2
3,933,941	+		BT3096	0.69	+1.6
3,933,975	+		BT3096	0.71	-2.0
3,933,979	+		BT3096	0.71	-0.9
3,933,979	+		BT3096	0.71	-2.4
3,933,994	+		BT3096	0.72	+0.6
3,934,000	-		BT3096	0.72	-1.9
3,934,019	+		BT3096	0.73	-2.0
3,934,019	+		BT3096	0.73	-1.7
3,934,067	+		BT3096	0.75	-1.8
3,934,068	-		BT3096	0.75	-2.6
3,934,100	+		BT3096	0.77	+0.0
3,934,101	-		BT3096	0.77	-1.4
3,934,101	-		BT3096	0.77	-0.7
3,934,153	+		BT3096	0.79	-2.4
3,934,153	+		BT3096	0.79	+0.0
3,934,154	-		BT3096	0.79	-2.3
3,934,165	+		BT3096	0.80	-4.2
3,934,192	-		BT3096	0.81	-1.4
3,934,201	-		BT3096	0.81	-1.6
3,934,332	+		BT3096	0.88	+0.0
3,934,332	+		BT3096	0.88	+0.0
3,934,363	+		BT3096	0.89	+0.6
3,934,377	+		BT3096	0.90	+0.0
3,934,378	-		BT3096	0.90	+1.0
3,934,464	-				-1.4
3,934,480	+				-1.0
3,934,481	-				+0.2
3,934,481	-				+0.0
3,934,543	-				-1.6
3,934,633	-				-0.8
3,934,660	+				-0.9
3,934,731	-				-1.0
3,934,765	+				-1.1
3,934,768	+				-1.4
3,934,810	-				-1.0
3,934,812	-				+0.0
3,934,814	+				-0.6
3,934,834	+				+0.7
3,934,835	-				-1.0
3,934,841	+				-1.0
3,934,842	-				-1.8
3,934,859	+				-1.9
3,934,876	+				+0.0
3,934,877	-				-0.4
3,934,898	+				-1.9
3,934,924	+				+1.0
3,934,924	+				-1.6
3,934,932	+				-1.4
3,934,933	-				-1.4
3,934,943	+				-1.2
3,934,946	+				+0.3
3,935,011	+				-2.0
3,935,012	-				-1.7
3,935,013	+				-1.0
3,935,013	+				+1.4
3,935,013	+				-1.8
3,935,187	+		BT3097	0.12	+0.0
3,935,226	-		BT3097	0.13	-2.0
3,935,287	+		BT3097	0.14	-1.6
3,935,326	+		BT3097	0.15	-2.0
3,935,419	+		BT3097	0.17	+0.7
3,935,427	-		BT3097	0.18	-0.2
3,935,441	-		BT3097	0.18	-2.0
3,935,449	-		BT3097	0.18	-0.7
3,935,496	-		BT3097	0.19	-0.9
3,935,526	-		BT3097	0.20	-1.7
3,935,526	-		BT3097	0.20	-0.4
3,935,529	-		BT3097	0.20	-1.2
3,935,720	-		BT3097	0.25	-1.3
3,935,720	-		BT3097	0.25	-0.2
3,935,721	+		BT3097	0.25	+0.8
3,935,746	-		BT3097	0.25	-2.3
3,935,823	+		BT3097	0.27	-0.2
3,935,823	+		BT3097	0.27	-1.1
3,935,849	+		BT3097	0.28	-0.6
3,935,849	+		BT3097	0.28	-0.3
3,935,911	+		BT3097	0.30	-0.2
3,935,926	+		BT3097	0.30	-1.3
3,935,926	+		BT3097	0.30	-0.7
3,935,960	-		BT3097	0.31	-1.3
3,935,992	-		BT3097	0.32	-1.9
3,935,994	+		BT3097	0.32	-1.0
3,935,994	+		BT3097	0.32	-1.9
3,935,995	-		BT3097	0.32	-0.7
3,936,068	-		BT3097	0.33	-1.7
3,936,068	-		BT3097	0.33	-0.2
3,936,116	+		BT3097	0.35	-1.0
3,936,231	-		BT3097	0.38	-0.6
3,936,232	+		BT3097	0.38	-1.1
3,936,234	+		BT3097	0.38	+1.6
3,936,290	+		BT3097	0.39	-1.0
3,936,297	+		BT3097	0.39	-2.9
3,936,298	-		BT3097	0.39	-0.7
3,936,298	-		BT3097	0.39	-2.3
3,936,298	-		BT3097	0.39	-1.3
3,936,298	-		BT3097	0.39	-1.3
3,936,310	+		BT3097	0.39	+2.3
3,936,310	+		BT3097	0.39	+1.3
3,936,310	+		BT3097	0.39	-0.2
3,936,310	+		BT3097	0.39	+0.3
3,936,313	-		BT3097	0.40	+0.3
3,936,313	-		BT3097	0.40	-1.4
3,936,333	-		BT3097	0.40	-1.6
3,936,333	-		BT3097	0.40	-2.8
3,936,430	+		BT3097	0.42	+0.0
3,936,431	-		BT3097	0.42	+2.6
3,936,442	+		BT3097	0.43	+0.0
3,936,443	-		BT3097	0.43	-1.1
3,936,443	-		BT3097	0.43	-1.7
3,936,462	-		BT3097	0.43	-0.9
3,936,464	-		BT3097	0.43	-0.9
3,936,487	+		BT3097	0.44	+0.0
3,936,488	-		BT3097	0.44	-0.4
3,936,565	-		BT3097	0.46	-0.6
3,936,565	-		BT3097	0.46	-1.6
3,936,669	-		BT3097	0.48	-1.0
3,936,689	-		BT3097	0.49	+0.0
3,936,709	+		BT3097	0.49	-0.4
3,936,773	+		BT3097	0.51	-1.6
3,936,796	+		BT3097	0.52	-1.1
3,936,800	+		BT3097	0.52	+0.9
3,936,801	-		BT3097	0.52	-0.6
3,936,819	-		BT3097	0.52	-0.6
3,936,917	+		BT3097	0.55	-1.3
3,936,939	-		BT3097	0.55	-1.4
3,936,970	+		BT3097	0.56	-2.0
3,936,971	-		BT3097	0.56	-0.7
3,937,012	+		BT3097	0.57	-3.0
3,937,013	-		BT3097	0.57	-2.3
3,937,015	+		BT3097	0.57	-0.5
3,937,015	+		BT3097	0.57	-1.0
3,937,015	+		BT3097	0.57	+1.0
3,937,034	+		BT3097	0.57	-0.1
3,937,057	+		BT3097	0.58	-1.6
3,937,057	+		BT3097	0.58	+0.7
3,937,057	+		BT3097	0.58	-0.6
3,937,057	+		BT3097	0.58	+1.0
3,937,057	+		BT3097	0.58	-0.5
3,937,058	-		BT3097	0.58	-0.9
3,937,058	-		BT3097	0.58	-1.2
3,937,062	-		BT3097	0.58	+1.0
3,937,080	+		BT3097	0.59	+0.0
3,937,091	+		BT3097	0.59	-2.4
3,937,091	+		BT3097	0.59	+0.0
3,937,092	-		BT3097	0.59	-1.0
3,937,197	+		BT3097	0.61	+1.2
3,937,201	+		BT3097	0.62	+1.4
3,937,337	+		BT3097	0.65	+1.0
3,937,451	-		BT3097	0.68	-1.0
3,937,451	-		BT3097	0.68	-2.3
3,937,542	+		BT3097	0.70	+0.9
3,937,542	+		BT3097	0.70	-2.6
3,937,542	+		BT3097	0.70	-0.9
3,937,543	-		BT3097	0.70	-0.3
3,937,570	-		BT3097	0.71	-2.0
3,937,587	+		BT3097	0.71	+0.4
3,937,588	-		BT3097	0.71	-0.5
3,937,674	-		BT3097	0.73	-0.9
3,937,730	+		BT3097	0.75	-3.0
3,937,731	-		BT3097	0.75	+0.0
3,937,778	+		BT3097	0.76	-2.5
3,937,778	+		BT3097	0.76	+0.6
3,937,779	-		BT3097	0.76	+0.0
3,937,784	+		BT3097	0.76	+1.0
3,937,784	+		BT3097	0.76	-1.0
3,937,865	+		BT3097	0.78	-0.7
3,937,866	-		BT3097	0.78	-0.3
3,937,866	-		BT3097	0.78	-1.5
3,937,866	-		BT3097	0.78	-1.2
3,937,866	-		BT3097	0.78	+0.0
3,937,918	-		BT3097	0.79	-1.0
3,938,010	-		BT3097	0.82	-1.7
3,938,015	-		BT3097	0.82	-2.2
3,938,021	+		BT3097	0.82	+1.0
3,938,040	+		BT3097	0.82	-1.3
3,938,067	+		BT3097	0.83	-1.4
3,938,085	+		BT3097	0.83	-0.6
3,938,086	-		BT3097	0.84	-1.2
3,938,105	+		BT3097	0.84	+0.6
3,938,106	-		BT3097	0.84	-0.3
3,938,106	-		BT3097	0.84	+0.0
3,938,106	-		BT3097	0.84	-1.2
3,938,111	-		BT3097	0.84	-0.3
3,938,150	-		BT3097	0.85	+0.0
3,938,150	-		BT3097	0.85	+1.0
3,938,208	-		BT3097	0.87	-1.7
3,938,262	-		BT3097	0.88	-0.5
3,938,292	+		BT3097	0.89	-2.1
3,938,293	-		BT3097	0.89	+0.0
3,938,294	+		BT3097	0.89	-1.1
3,938,342	+		BT3097	0.90	-2.6
3,938,343	-		BT3097	0.90	-2.3
3,938,343	-		BT3097	0.90	-2.2
3,938,349	-				-1.3
3,938,351	+				-1.8
3,938,402	+				-1.3
3,938,402	+				+0.0
3,938,403	-				+0.0
3,938,411	-				-1.9
3,938,439	-				-0.5
3,938,496	-				-0.2
3,938,513	+				+0.6
3,938,550	-				-0.5
3,938,550	-				+0.4
3,938,571	-				-0.4
3,938,697	-				+1.0
3,938,711	+				-1.6
3,938,773	-				-2.0
3,938,780	-				+0.0
3,938,834	+				-0.4
3,938,840	+				+0.0
3,938,843	+				-1.2
3,938,849	+				-0.7
3,938,850	-				+0.0
3,938,856	+				-1.0
3,938,862	+				-1.4
3,938,863	-				-1.1
3,938,902	-		BT3098	0.16	-3.3
3,938,905	+		BT3098	0.17	-0.6
3,938,905	+		BT3098	0.17	-0.8
3,938,905	+		BT3098	0.17	-0.6
3,938,905	+		BT3098	0.17	+1.0
3,938,906	-		BT3098	0.17	-0.4
3,938,910	-		BT3098	0.18	+0.0
3,938,923	+		BT3098	0.20	-1.7
3,938,975	+		BT3098	0.29	-2.0
3,938,976	-		BT3098	0.29	-3.0
3,938,976	-		BT3098	0.29	-2.0
3,939,014	-		BT3098	0.36	+0.2
3,939,016	+		BT3098	0.37	+1.4
3,939,016	+		BT3098	0.37	-1.6
3,939,017	-		BT3098	0.37	-2.0
3,939,017	-		BT3098	0.37	+0.0
3,939,017	-		BT3098	0.37	+0.0
3,939,020	+		BT3098	0.37	-2.3
3,939,049	+		BT3098	0.42	+2.3
3,939,050	-		BT3098	0.43	-1.7
3,939,051	+		BT3098	0.43	-1.0
3,939,081	-		BT3098	0.48	-2.1
3,939,100	-		BT3098	0.52	-1.6
3,939,122	-		BT3098	0.56	+0.6
3,939,132	+		BT3098	0.57	-1.2
3,939,132	+		BT3098	0.57	-1.6
3,939,153	-		BT3098	0.61	-1.2
3,939,167	-		BT3098	0.64	-1.8
3,939,214	+		BT3098	0.72	-0.9
3,939,215	-		BT3098	0.72	-2.6
3,939,215	-		BT3098	0.72	-0.4
3,939,218	+		BT3098	0.73	-1.8
3,939,218	+		BT3098	0.73	-0.6
3,939,303	+		BT3098	0.88	-2.4
3,939,303	+		BT3098	0.88	-0.3
3,939,351	+				-1.2
3,939,355	-				+1.0
3,939,355	-				-0.9
3,939,367	+				-0.4
3,939,371	+				-2.8
3,939,372	-				-1.5
3,939,387	+				+1.0
3,939,388	-				-2.9
3,939,388	-				-1.1
3,939,472	+				-1.0
3,939,473	-				-1.4
3,939,493	+				-1.8
3,939,498	+				-2.0
3,939,514	+				-1.3
3,939,515	-				-0.5
3,939,520	+				+0.0
3,939,523	+				-3.0
3,939,523	+				+0.0
3,939,570	-		BT3099	0.16	+2.0
3,939,658	+		BT3099	0.32	-2.6
3,939,680	+		BT3099	0.36	-2.2
3,939,680	+		BT3099	0.36	-1.4
3,939,680	+		BT3099	0.36	-1.3
3,939,681	-		BT3099	0.36	-0.7
3,939,681	-		BT3099	0.36	-1.4
3,939,702	+		BT3099	0.40	-2.2
3,939,703	-		BT3099	0.40	-2.5
3,939,713	+		BT3099	0.42	+2.0
3,939,715	+		BT3099	0.42	+0.4
3,939,732	+		BT3099	0.45	+0.0
3,939,734	+		BT3099	0.45	+0.0