Experiment: KLEB28 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19525 and BWI76_RS19530 are separated by 174 nucleotides BWI76_RS19530 and BWI76_RS19535 are separated by 155 nucleotides BWI76_RS19535 and BWI76_RS19540 are separated by 105 nucleotides
BWI76_RS19525: BWI76_RS19525 - D-alanyl-D-alanine endopeptidase, at 4,081,298 to 4,082,245
_RS19525
BWI76_RS19530: BWI76_RS19530 - YIP1 family protein, at 4,082,420 to 4,083,007
_RS19530
BWI76_RS19535: BWI76_RS19535 - putative integral membrane protein, at 4,083,163 to 4,083,732
_RS19535
BWI76_RS19540: BWI76_RS19540 - multidrug transporter permease, at 4,083,838 to 4,085,280
_RS19540
Position (kb)
4082
4083
4084 Strain fitness (log2 ratio)
-1
0
1 at 4081.612 kb on + strand, within BWI76_RS19525 at 4082.036 kb on - strand, within BWI76_RS19525 at 4082.209 kb on + strand at 4082.217 kb on - strand at 4082.217 kb on - strand at 4082.307 kb on - strand at 4082.309 kb on - strand at 4082.309 kb on - strand at 4082.426 kb on + strand at 4082.455 kb on - strand at 4082.510 kb on + strand, within BWI76_RS19530 at 4082.580 kb on + strand, within BWI76_RS19530 at 4082.580 kb on + strand, within BWI76_RS19530 at 4082.801 kb on - strand, within BWI76_RS19530 at 4082.925 kb on - strand, within BWI76_RS19530 at 4083.031 kb on + strand at 4083.039 kb on - strand at 4083.120 kb on + strand at 4083.254 kb on - strand, within BWI76_RS19535 at 4083.273 kb on - strand, within BWI76_RS19535 at 4083.432 kb on - strand, within BWI76_RS19535 at 4083.767 kb on - strand at 4083.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB28 MOI 0.1 remove 4,081,612 + BWI76_RS19525 0.33 +0.3 4,082,036 - BWI76_RS19525 0.78 -0.0 4,082,209 + +0.1 4,082,217 - -0.2 4,082,217 - -0.1 4,082,307 - -0.1 4,082,309 - +1.0 4,082,309 - -0.2 4,082,426 + -0.2 4,082,455 - +0.4 4,082,510 + BWI76_RS19530 0.15 -0.6 4,082,580 + BWI76_RS19530 0.27 -1.6 4,082,580 + BWI76_RS19530 0.27 -0.2 4,082,801 - BWI76_RS19530 0.65 -0.2 4,082,925 - BWI76_RS19530 0.86 -0.0 4,083,031 + -0.1 4,083,039 - +0.3 4,083,120 + +0.2 4,083,254 - BWI76_RS19535 0.16 +0.2 4,083,273 - BWI76_RS19535 0.19 +0.4 4,083,432 - BWI76_RS19535 0.47 +0.3 4,083,767 - -0.1 4,083,860 + -0.3
Or see this region's nucleotide sequence