Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18495

Experiment: KLEB28 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18485 and BWI76_RS18490 are separated by 126 nucleotidesBWI76_RS18490 and BWI76_RS18495 overlap by 53 nucleotidesBWI76_RS18495 and BWI76_RS18500 are separated by 168 nucleotides BWI76_RS18485: BWI76_RS18485 - LysR family transcriptional regulator, at 3,833,202 to 3,834,104 _RS18485 BWI76_RS18490: BWI76_RS18490 - cupin, at 3,834,231 to 3,834,638 _RS18490 BWI76_RS18495: BWI76_RS18495 - hypothetical protein, at 3,834,586 to 3,835,530 _RS18495 BWI76_RS18500: BWI76_RS18500 - cation transporting ATPase E1-E2 family protein, at 3,835,699 to 3,838,386 _RS18500 Position (kb) 3834 3835 3836Strain fitness (log2 ratio) -1 0 1at 3833.643 kb on - strand, within BWI76_RS18485at 3833.758 kb on + strand, within BWI76_RS18485at 3833.962 kb on - strand, within BWI76_RS18485at 3833.980 kb on - strand, within BWI76_RS18485at 3833.995 kb on - strand, within BWI76_RS18485at 3833.995 kb on - strand, within BWI76_RS18485at 3834.632 kb on + strandat 3834.632 kb on + strandat 3834.632 kb on + strandat 3834.632 kb on + strandat 3834.680 kb on - strandat 3834.853 kb on - strand, within BWI76_RS18495at 3834.853 kb on - strand, within BWI76_RS18495at 3834.894 kb on + strand, within BWI76_RS18495at 3834.973 kb on - strand, within BWI76_RS18495at 3835.251 kb on - strand, within BWI76_RS18495at 3835.336 kb on - strand, within BWI76_RS18495at 3835.413 kb on - strand, within BWI76_RS18495at 3835.450 kb on - strandat 3835.629 kb on - strandat 3835.696 kb on + strandat 3835.704 kb on - strandat 3835.755 kb on + strandat 3835.779 kb on + strandat 3835.874 kb on - strandat 3835.965 kb on - strandat 3836.115 kb on + strand, within BWI76_RS18500at 3836.123 kb on - strand, within BWI76_RS18500at 3836.228 kb on - strand, within BWI76_RS18500at 3836.367 kb on - strand, within BWI76_RS18500at 3836.432 kb on - strand, within BWI76_RS18500at 3836.505 kb on + strand, within BWI76_RS18500at 3836.513 kb on - strand, within BWI76_RS18500

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB28 MOI 0.1
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3,833,643 - BWI76_RS18485 0.49 +0.2
3,833,758 + BWI76_RS18485 0.62 -0.8
3,833,962 - BWI76_RS18485 0.84 -0.2
3,833,980 - BWI76_RS18485 0.86 -0.1
3,833,995 - BWI76_RS18485 0.88 -0.3
3,833,995 - BWI76_RS18485 0.88 -0.2
3,834,632 + +0.7
3,834,632 + +0.1
3,834,632 + +0.2
3,834,632 + -0.4
3,834,680 - +0.0
3,834,853 - BWI76_RS18495 0.28 +0.0
3,834,853 - BWI76_RS18495 0.28 +0.3
3,834,894 + BWI76_RS18495 0.33 +0.7
3,834,973 - BWI76_RS18495 0.41 -0.0
3,835,251 - BWI76_RS18495 0.70 +0.6
3,835,336 - BWI76_RS18495 0.79 +0.5
3,835,413 - BWI76_RS18495 0.88 +0.6
3,835,450 - +0.1
3,835,629 - -0.5
3,835,696 + +0.4
3,835,704 - -0.2
3,835,755 + -0.4
3,835,779 + -0.3
3,835,874 - +0.0
3,835,965 - -0.6
3,836,115 + BWI76_RS18500 0.15 +0.0
3,836,123 - BWI76_RS18500 0.16 +0.6
3,836,228 - BWI76_RS18500 0.20 +0.4
3,836,367 - BWI76_RS18500 0.25 -0.3
3,836,432 - BWI76_RS18500 0.27 -0.0
3,836,505 + BWI76_RS18500 0.30 +0.0
3,836,513 - BWI76_RS18500 0.30 -0.3

Or see this region's nucleotide sequence