Experiment: KLEB28 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18230 and BWI76_RS18235 overlap by 26 nucleotides BWI76_RS18235 and BWI76_RS18240 are separated by 159 nucleotides BWI76_RS18240 and BWI76_RS18245 are separated by 14 nucleotides
BWI76_RS18230: BWI76_RS18230 - trehalose-6-phosphate synthase, at 3,787,690 to 3,789,114
_RS18230
BWI76_RS18235: BWI76_RS18235 - trehalose-phosphatase, at 3,789,089 to 3,789,892
_RS18235
BWI76_RS18240: BWI76_RS18240 - L-arabinose ABC transporter permease AraH, at 3,790,052 to 3,791,032
_RS18240
BWI76_RS18245: BWI76_RS18245 - L-arabinose transporter ATP-binding protein, at 3,791,047 to 3,792,561
_RS18245
Position (kb)
3790
3791
3792 Strain fitness (log2 ratio)
-1
0
1 at 3789.109 kb on + strand at 3789.429 kb on + strand, within BWI76_RS18235 at 3789.542 kb on - strand, within BWI76_RS18235 at 3789.645 kb on - strand, within BWI76_RS18235 at 3789.754 kb on + strand, within BWI76_RS18235 at 3789.811 kb on - strand, within BWI76_RS18235 at 3789.961 kb on - strand at 3790.092 kb on - strand at 3790.596 kb on + strand, within BWI76_RS18240 at 3790.603 kb on - strand, within BWI76_RS18240 at 3791.010 kb on - strand at 3791.276 kb on - strand, within BWI76_RS18245 at 3791.276 kb on - strand, within BWI76_RS18245 at 3791.298 kb on + strand, within BWI76_RS18245 at 3791.303 kb on + strand, within BWI76_RS18245 at 3791.306 kb on - strand, within BWI76_RS18245 at 3791.387 kb on - strand, within BWI76_RS18245 at 3791.438 kb on + strand, within BWI76_RS18245 at 3791.446 kb on + strand, within BWI76_RS18245 at 3791.555 kb on - strand, within BWI76_RS18245 at 3791.555 kb on - strand, within BWI76_RS18245 at 3791.567 kb on - strand, within BWI76_RS18245 at 3791.684 kb on + strand, within BWI76_RS18245 at 3791.909 kb on + strand, within BWI76_RS18245
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB28 MOI 0.1 remove 3,789,109 + +0.4 3,789,429 + BWI76_RS18235 0.42 +0.4 3,789,542 - BWI76_RS18235 0.56 -0.0 3,789,645 - BWI76_RS18235 0.69 +0.3 3,789,754 + BWI76_RS18235 0.83 -1.1 3,789,811 - BWI76_RS18235 0.90 -0.1 3,789,961 - -1.0 3,790,092 - -0.3 3,790,596 + BWI76_RS18240 0.55 -0.7 3,790,603 - BWI76_RS18240 0.56 -0.6 3,791,010 - +0.4 3,791,276 - BWI76_RS18245 0.15 +0.0 3,791,276 - BWI76_RS18245 0.15 +0.2 3,791,298 + BWI76_RS18245 0.17 +0.2 3,791,303 + BWI76_RS18245 0.17 +1.5 3,791,306 - BWI76_RS18245 0.17 +0.1 3,791,387 - BWI76_RS18245 0.22 +0.0 3,791,438 + BWI76_RS18245 0.26 +0.0 3,791,446 + BWI76_RS18245 0.26 -0.3 3,791,555 - BWI76_RS18245 0.34 +0.2 3,791,555 - BWI76_RS18245 0.34 -1.0 3,791,567 - BWI76_RS18245 0.34 -0.4 3,791,684 + BWI76_RS18245 0.42 -0.8 3,791,909 + BWI76_RS18245 0.57 +0.6
Or see this region's nucleotide sequence