Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15195

Experiment: KLEB28 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15190 and BWI76_RS15195 are separated by 107 nucleotidesBWI76_RS15195 and BWI76_RS15200 overlap by 1 nucleotides BWI76_RS15190: BWI76_RS15190 - GGDEF domain-containing protein, at 3,184,118 to 3,185,530 _RS15190 BWI76_RS15195: BWI76_RS15195 - DUF4186 domain-containing protein, at 3,185,638 to 3,186,012 _RS15195 BWI76_RS15200: BWI76_RS15200 - glutaminase, at 3,186,012 to 3,186,938 _RS15200 Position (kb) 3185 3186 3187Strain fitness (log2 ratio) -1 0 1at 3184.979 kb on - strand, within BWI76_RS15190at 3185.286 kb on - strand, within BWI76_RS15190at 3185.294 kb on - strand, within BWI76_RS15190at 3185.446 kb on + strandat 3185.446 kb on + strandat 3185.543 kb on + strandat 3185.710 kb on - strand, within BWI76_RS15195at 3185.881 kb on - strand, within BWI76_RS15195at 3186.093 kb on - strandat 3186.326 kb on + strand, within BWI76_RS15200at 3186.539 kb on - strand, within BWI76_RS15200

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB28 MOI 0.1
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3,184,979 - BWI76_RS15190 0.61 +0.1
3,185,286 - BWI76_RS15190 0.83 +0.6
3,185,294 - BWI76_RS15190 0.83 -1.4
3,185,446 + +0.3
3,185,446 + +0.2
3,185,543 + +0.5
3,185,710 - BWI76_RS15195 0.19 -0.4
3,185,881 - BWI76_RS15195 0.65 -0.9
3,186,093 - -0.0
3,186,326 + BWI76_RS15200 0.34 -0.0
3,186,539 - BWI76_RS15200 0.57 -0.1

Or see this region's nucleotide sequence