Experiment: KLEB28 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00540 and BWI76_RS00545 overlap by 14 nucleotides BWI76_RS00545 and BWI76_RS00550 are separated by 56 nucleotides BWI76_RS00550 and BWI76_RS00555 are separated by 9 nucleotides BWI76_RS00555 and BWI76_RS00560 overlap by 4 nucleotides
BWI76_RS00540: BWI76_RS00540 - PTS system ascorbate-specific transporter subunit IIC, at 110,216 to 111,583
_RS00540
BWI76_RS00545: BWI76_RS00545 - putative class-II ketose-bisphosphate aldolase, at 111,570 to 112,412
_RS00545
BWI76_RS00550: BWI76_RS00550 - hypothetical protein, at 112,469 to 112,738
_RS00550
BWI76_RS00555: BWI76_RS00555 - PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN, at 112,748 to 113,185
_RS00555
BWI76_RS00560: BWI76_RS00560 - hypothetical protein, at 113,182 to 113,736
_RS00560
Position (kb) 112
113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 111.520 kb on + strand at 111.528 kb on - strand at 111.528 kb on - strand at 111.543 kb on - strand at 111.558 kb on + strand at 111.558 kb on - strand at 111.564 kb on + strand at 111.566 kb on + strand at 111.584 kb on + strand at 111.584 kb on + strand at 111.584 kb on + strand at 111.584 kb on + strand at 111.584 kb on - strand at 111.584 kb on - strand at 111.586 kb on - strand at 111.592 kb on - strand at 111.592 kb on - strand at 111.592 kb on - strand at 111.637 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.652 kb on + strand at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.660 kb on - strand, within BWI76_RS00545 at 111.694 kb on + strand, within BWI76_RS00545 at 111.694 kb on + strand, within BWI76_RS00545 at 111.694 kb on + strand, within BWI76_RS00545 at 111.694 kb on + strand, within BWI76_RS00545 at 111.702 kb on - strand, within BWI76_RS00545 at 111.702 kb on - strand, within BWI76_RS00545 at 111.702 kb on - strand, within BWI76_RS00545 at 111.720 kb on - strand, within BWI76_RS00545 at 111.721 kb on + strand, within BWI76_RS00545 at 111.759 kb on - strand, within BWI76_RS00545 at 111.766 kb on - strand, within BWI76_RS00545 at 111.795 kb on + strand, within BWI76_RS00545 at 111.795 kb on + strand, within BWI76_RS00545 at 111.795 kb on - strand, within BWI76_RS00545 at 111.805 kb on + strand, within BWI76_RS00545 at 111.811 kb on + strand, within BWI76_RS00545 at 111.823 kb on + strand, within BWI76_RS00545 at 111.828 kb on + strand, within BWI76_RS00545 at 111.828 kb on + strand, within BWI76_RS00545 at 111.828 kb on + strand, within BWI76_RS00545 at 111.831 kb on - strand, within BWI76_RS00545 at 111.831 kb on - strand, within BWI76_RS00545 at 111.836 kb on - strand, within BWI76_RS00545 at 111.856 kb on - strand, within BWI76_RS00545 at 111.861 kb on + strand, within BWI76_RS00545 at 111.868 kb on + strand, within BWI76_RS00545 at 111.876 kb on + strand, within BWI76_RS00545 at 111.883 kb on - strand, within BWI76_RS00545 at 111.969 kb on + strand, within BWI76_RS00545 at 111.996 kb on + strand, within BWI76_RS00545 at 112.009 kb on - strand, within BWI76_RS00545 at 112.020 kb on + strand, within BWI76_RS00545 at 112.051 kb on - strand, within BWI76_RS00545 at 112.058 kb on - strand, within BWI76_RS00545 at 112.068 kb on - strand, within BWI76_RS00545 at 112.113 kb on + strand, within BWI76_RS00545 at 112.115 kb on - strand, within BWI76_RS00545 at 112.115 kb on - strand, within BWI76_RS00545 at 112.126 kb on - strand, within BWI76_RS00545 at 112.166 kb on - strand, within BWI76_RS00545 at 112.188 kb on + strand, within BWI76_RS00545 at 112.191 kb on - strand, within BWI76_RS00545 at 112.209 kb on - strand, within BWI76_RS00545 at 112.229 kb on - strand, within BWI76_RS00545 at 112.229 kb on - strand, within BWI76_RS00545 at 112.241 kb on - strand, within BWI76_RS00545 at 112.245 kb on + strand, within BWI76_RS00545 at 112.253 kb on - strand, within BWI76_RS00545 at 112.253 kb on - strand, within BWI76_RS00545 at 112.256 kb on + strand, within BWI76_RS00545 at 112.270 kb on - strand, within BWI76_RS00545 at 112.274 kb on + strand, within BWI76_RS00545 at 112.296 kb on - strand, within BWI76_RS00545 at 112.296 kb on - strand, within BWI76_RS00545 at 112.296 kb on - strand, within BWI76_RS00545 at 112.302 kb on + strand, within BWI76_RS00545 at 112.306 kb on - strand, within BWI76_RS00545 at 112.306 kb on - strand, within BWI76_RS00545 at 112.326 kb on + strand, within BWI76_RS00545 at 112.326 kb on + strand at 112.326 kb on + strand, within BWI76_RS00545 at 112.326 kb on + strand, within BWI76_RS00545 at 112.326 kb on + strand, within BWI76_RS00545 at 112.326 kb on + strand, within BWI76_RS00545 at 112.334 kb on - strand at 112.334 kb on - strand at 112.334 kb on - strand at 112.375 kb on + strand at 112.383 kb on - strand at 112.383 kb on - strand at 112.383 kb on - strand at 112.403 kb on + strand at 112.427 kb on - strand at 112.442 kb on - strand at 112.442 kb on - strand at 112.444 kb on + strand at 112.444 kb on + strand at 112.444 kb on + strand at 112.444 kb on + strand at 112.447 kb on + strand at 112.447 kb on - strand at 112.449 kb on + strand at 112.452 kb on + strand at 112.455 kb on - strand at 112.457 kb on - strand at 112.459 kb on + strand at 112.460 kb on - strand at 112.471 kb on + strand at 112.471 kb on + strand at 112.471 kb on + strand at 112.479 kb on - strand at 112.479 kb on - strand at 112.481 kb on + strand at 112.512 kb on - strand, within BWI76_RS00550 at 112.514 kb on + strand, within BWI76_RS00550 at 112.519 kb on + strand, within BWI76_RS00550 at 112.519 kb on + strand, within BWI76_RS00550 at 112.522 kb on - strand, within BWI76_RS00550 at 112.524 kb on + strand, within BWI76_RS00550 at 112.532 kb on - strand, within BWI76_RS00550 at 112.534 kb on + strand, within BWI76_RS00550 at 112.536 kb on + strand, within BWI76_RS00550 at 112.536 kb on + strand, within BWI76_RS00550 at 112.536 kb on + strand, within BWI76_RS00550 at 112.536 kb on + strand, within BWI76_RS00550 at 112.536 kb on + strand, within BWI76_RS00550 at 112.536 kb on + strand, within BWI76_RS00550 at 112.544 kb on - strand, within BWI76_RS00550 at 112.546 kb on - strand, within BWI76_RS00550 at 112.563 kb on + strand, within BWI76_RS00550 at 112.574 kb on + strand, within BWI76_RS00550 at 112.577 kb on + strand, within BWI76_RS00550 at 112.577 kb on + strand, within BWI76_RS00550 at 112.582 kb on + strand, within BWI76_RS00550 at 112.590 kb on - strand, within BWI76_RS00550 at 112.590 kb on - strand, within BWI76_RS00550 at 112.590 kb on - strand, within BWI76_RS00550 at 112.613 kb on + strand, within BWI76_RS00550 at 112.614 kb on + strand, within BWI76_RS00550 at 112.614 kb on + strand, within BWI76_RS00550 at 112.614 kb on + strand, within BWI76_RS00550 at 112.622 kb on - strand, within BWI76_RS00550 at 112.622 kb on - strand, within BWI76_RS00550 at 112.627 kb on + strand, within BWI76_RS00550 at 112.632 kb on + strand, within BWI76_RS00550 at 112.632 kb on + strand, within BWI76_RS00550 at 112.632 kb on + strand, within BWI76_RS00550 at 112.635 kb on - strand, within BWI76_RS00550 at 112.635 kb on - strand, within BWI76_RS00550 at 112.635 kb on - strand, within BWI76_RS00550 at 112.652 kb on + strand, within BWI76_RS00550 at 112.657 kb on + strand, within BWI76_RS00550 at 112.675 kb on + strand, within BWI76_RS00550 at 112.675 kb on + strand, within BWI76_RS00550 at 112.675 kb on + strand at 112.677 kb on + strand, within BWI76_RS00550 at 112.677 kb on + strand, within BWI76_RS00550 at 112.690 kb on + strand, within BWI76_RS00550 at 112.690 kb on + strand, within BWI76_RS00550 at 112.698 kb on + strand, within BWI76_RS00550 at 112.698 kb on + strand, within BWI76_RS00550 at 112.706 kb on + strand, within BWI76_RS00550 at 112.706 kb on - strand, within BWI76_RS00550 at 112.768 kb on + strand at 112.768 kb on + strand at 112.768 kb on + strand at 112.768 kb on + strand at 112.768 kb on + strand at 112.772 kb on - strand at 112.776 kb on - strand at 112.779 kb on + strand at 112.794 kb on + strand, within BWI76_RS00555 at 112.799 kb on + strand, within BWI76_RS00555 at 112.802 kb on - strand, within BWI76_RS00555 at 112.802 kb on - strand, within BWI76_RS00555 at 112.802 kb on - strand, within BWI76_RS00555 at 112.802 kb on - strand, within BWI76_RS00555 at 112.810 kb on - strand at 112.810 kb on - strand, within BWI76_RS00555 at 112.810 kb on - strand, within BWI76_RS00555 at 112.820 kb on - strand, within BWI76_RS00555 at 112.856 kb on + strand, within BWI76_RS00555 at 112.864 kb on - strand, within BWI76_RS00555 at 112.864 kb on - strand, within BWI76_RS00555 at 112.906 kb on - strand, within BWI76_RS00555 at 112.906 kb on - strand, within BWI76_RS00555 at 112.956 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.990 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 113.073 kb on - strand, within BWI76_RS00555 at 113.073 kb on - strand, within BWI76_RS00555 at 113.079 kb on + strand, within BWI76_RS00555 at 113.110 kb on - strand, within BWI76_RS00555 at 113.157 kb on + strand at 113.157 kb on + strand at 113.165 kb on - strand at 113.165 kb on - strand at 113.168 kb on - strand at 113.179 kb on + strand at 113.179 kb on + strand at 113.187 kb on - strand at 113.193 kb on + strand at 113.309 kb on + strand, within BWI76_RS00560 at 113.346 kb on + strand, within BWI76_RS00560 at 113.540 kb on + strand, within BWI76_RS00560 at 113.590 kb on - strand, within BWI76_RS00560 at 113.686 kb on + strand at 113.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB28 MOI 1 remove 111,520 + +0.4 111,528 - -0.3 111,528 - -0.9 111,543 - +1.1 111,558 + -0.5 111,558 - -0.4 111,564 + +0.9 111,566 + +0.0 111,584 + -0.3 111,584 + +1.1 111,584 + -0.1 111,584 + +0.2 111,584 - -2.0 111,584 - -0.7 111,586 - +0.2 111,592 - -0.2 111,592 - -0.1 111,592 - +0.3 111,637 + -0.8 111,652 + +0.1 111,652 + -0.9 111,652 + -0.8 111,652 + -0.1 111,652 + +0.6 111,652 + -1.8 111,652 + +0.1 111,652 + -0.5 111,652 + -0.3 111,652 + +0.5 111,660 - BWI76_RS00545 0.11 -0.6 111,660 - BWI76_RS00545 0.11 +0.6 111,660 - BWI76_RS00545 0.11 +0.8 111,660 - BWI76_RS00545 0.11 -0.2 111,660 - BWI76_RS00545 0.11 -0.4 111,660 - BWI76_RS00545 0.11 +0.6 111,660 - BWI76_RS00545 0.11 -0.6 111,660 - BWI76_RS00545 0.11 -1.3 111,660 - BWI76_RS00545 0.11 -0.6 111,694 + BWI76_RS00545 0.15 +0.3 111,694 + BWI76_RS00545 0.15 -0.2 111,694 + BWI76_RS00545 0.15 -0.8 111,694 + BWI76_RS00545 0.15 -1.4 111,702 - BWI76_RS00545 0.16 -0.2 111,702 - BWI76_RS00545 0.16 -1.1 111,702 - BWI76_RS00545 0.16 +0.2 111,720 - BWI76_RS00545 0.18 -0.0 111,721 + BWI76_RS00545 0.18 -0.2 111,759 - BWI76_RS00545 0.22 +0.8 111,766 - BWI76_RS00545 0.23 -0.3 111,795 + BWI76_RS00545 0.27 -0.2 111,795 + BWI76_RS00545 0.27 -0.0 111,795 - BWI76_RS00545 0.27 +0.3 111,805 + BWI76_RS00545 0.28 -0.1 111,811 + BWI76_RS00545 0.29 -0.1 111,823 + BWI76_RS00545 0.30 -0.8 111,828 + BWI76_RS00545 0.31 +0.2 111,828 + BWI76_RS00545 0.31 -2.0 111,828 + BWI76_RS00545 0.31 -0.3 111,831 - BWI76_RS00545 0.31 -0.4 111,831 - BWI76_RS00545 0.31 -0.2 111,836 - BWI76_RS00545 0.32 +0.6 111,856 - BWI76_RS00545 0.34 -1.2 111,861 + BWI76_RS00545 0.35 +0.4 111,868 + BWI76_RS00545 0.35 -0.2 111,876 + BWI76_RS00545 0.36 -0.1 111,883 - BWI76_RS00545 0.37 -0.2 111,969 + BWI76_RS00545 0.47 -1.3 111,996 + BWI76_RS00545 0.51 -0.4 112,009 - BWI76_RS00545 0.52 -0.2 112,020 + BWI76_RS00545 0.53 +0.4 112,051 - BWI76_RS00545 0.57 -1.4 112,058 - BWI76_RS00545 0.58 -0.6 112,068 - BWI76_RS00545 0.59 -0.7 112,113 + BWI76_RS00545 0.64 +0.1 112,115 - BWI76_RS00545 0.65 -0.6 112,115 - BWI76_RS00545 0.65 -1.5 112,126 - BWI76_RS00545 0.66 -0.3 112,166 - BWI76_RS00545 0.71 +0.2 112,188 + BWI76_RS00545 0.73 -0.1 112,191 - BWI76_RS00545 0.74 -0.6 112,209 - BWI76_RS00545 0.76 -0.0 112,229 - BWI76_RS00545 0.78 -0.5 112,229 - BWI76_RS00545 0.78 +0.1 112,241 - BWI76_RS00545 0.80 -0.6 112,245 + BWI76_RS00545 0.80 -0.0 112,253 - BWI76_RS00545 0.81 -0.3 112,253 - BWI76_RS00545 0.81 -0.3 112,256 + BWI76_RS00545 0.81 -0.1 112,270 - BWI76_RS00545 0.83 +2.4 112,274 + BWI76_RS00545 0.84 -0.2 112,296 - BWI76_RS00545 0.86 +0.3 112,296 - BWI76_RS00545 0.86 -0.5 112,296 - BWI76_RS00545 0.86 -0.5 112,302 + BWI76_RS00545 0.87 -0.2 112,306 - BWI76_RS00545 0.87 -0.7 112,306 - BWI76_RS00545 0.87 -0.5 112,326 + BWI76_RS00545 0.90 +0.0 112,326 + +1.4 112,326 + BWI76_RS00545 0.90 +0.1 112,326 + BWI76_RS00545 0.90 +0.6 112,326 + BWI76_RS00545 0.90 +2.2 112,326 + BWI76_RS00545 0.90 +0.1 112,334 - +0.4 112,334 - -0.1 112,334 - +0.4 112,375 + -0.6 112,383 - -0.2 112,383 - -0.0 112,383 - +0.2 112,403 + -0.1 112,427 - -0.0 112,442 - +0.6 112,442 - -0.2 112,444 + +0.1 112,444 + -0.2 112,444 + -0.1 112,444 + -0.5 112,447 + -0.6 112,447 - +0.5 112,449 + -0.3 112,452 + -0.9 112,455 - +0.0 112,457 - +0.1 112,459 + +0.5 112,460 - +0.5 112,471 + -1.5 112,471 + +0.1 112,471 + -0.8 112,479 - +0.6 112,479 - +0.3 112,481 + +0.2 112,512 - BWI76_RS00550 0.16 -0.1 112,514 + BWI76_RS00550 0.17 -0.2 112,519 + BWI76_RS00550 0.19 -0.4 112,519 + BWI76_RS00550 0.19 +0.0 112,522 - BWI76_RS00550 0.20 -0.4 112,524 + BWI76_RS00550 0.20 -0.1 112,532 - BWI76_RS00550 0.23 -0.9 112,534 + BWI76_RS00550 0.24 -0.5 112,536 + BWI76_RS00550 0.25 -0.5 112,536 + BWI76_RS00550 0.25 -0.3 112,536 + BWI76_RS00550 0.25 -0.5 112,536 + BWI76_RS00550 0.25 +0.1 112,536 + BWI76_RS00550 0.25 -0.9 112,536 + BWI76_RS00550 0.25 -0.3 112,544 - BWI76_RS00550 0.28 -0.2 112,546 - BWI76_RS00550 0.29 -0.6 112,563 + BWI76_RS00550 0.35 -1.2 112,574 + BWI76_RS00550 0.39 -0.4 112,577 + BWI76_RS00550 0.40 -1.4 112,577 + BWI76_RS00550 0.40 -0.5 112,582 + BWI76_RS00550 0.42 -0.6 112,590 - BWI76_RS00550 0.45 -0.1 112,590 - BWI76_RS00550 0.45 -0.4 112,590 - BWI76_RS00550 0.45 -0.6 112,613 + BWI76_RS00550 0.53 -0.1 112,614 + BWI76_RS00550 0.54 +0.5 112,614 + BWI76_RS00550 0.54 -0.4 112,614 + BWI76_RS00550 0.54 -0.6 112,622 - BWI76_RS00550 0.57 -0.1 112,622 - BWI76_RS00550 0.57 -0.6 112,627 + BWI76_RS00550 0.59 +0.1 112,632 + BWI76_RS00550 0.60 +0.1 112,632 + BWI76_RS00550 0.60 +0.2 112,632 + BWI76_RS00550 0.60 -0.8 112,635 - BWI76_RS00550 0.61 -0.7 112,635 - BWI76_RS00550 0.61 -0.1 112,635 - BWI76_RS00550 0.61 -0.1 112,652 + BWI76_RS00550 0.68 -0.3 112,657 + BWI76_RS00550 0.70 -0.9 112,675 + BWI76_RS00550 0.76 -0.5 112,675 + BWI76_RS00550 0.76 -0.1 112,675 + -1.6 112,677 + BWI76_RS00550 0.77 +0.1 112,677 + BWI76_RS00550 0.77 -1.0 112,690 + BWI76_RS00550 0.82 -0.5 112,690 + BWI76_RS00550 0.82 +0.1 112,698 + BWI76_RS00550 0.85 -0.5 112,698 + BWI76_RS00550 0.85 +0.1 112,706 + BWI76_RS00550 0.88 -0.2 112,706 - BWI76_RS00550 0.88 +0.1 112,768 + -0.7 112,768 + -0.2 112,768 + -0.2 112,768 + +0.0 112,768 + -0.1 112,772 - -0.4 112,776 - -0.9 112,779 + -0.0 112,794 + BWI76_RS00555 0.11 -0.2 112,799 + BWI76_RS00555 0.12 +0.1 112,802 - BWI76_RS00555 0.12 +0.1 112,802 - BWI76_RS00555 0.12 +0.6 112,802 - BWI76_RS00555 0.12 -0.0 112,802 - BWI76_RS00555 0.12 -0.2 112,810 - -1.0 112,810 - BWI76_RS00555 0.14 +0.5 112,810 - BWI76_RS00555 0.14 +0.3 112,820 - BWI76_RS00555 0.16 -0.4 112,856 + BWI76_RS00555 0.25 +0.5 112,864 - BWI76_RS00555 0.26 +1.1 112,864 - BWI76_RS00555 0.26 -0.7 112,906 - BWI76_RS00555 0.36 +0.1 112,906 - BWI76_RS00555 0.36 +0.1 112,956 + BWI76_RS00555 0.47 +0.5 112,983 + BWI76_RS00555 0.54 -0.4 112,983 + BWI76_RS00555 0.54 -1.3 112,983 + BWI76_RS00555 0.54 +0.9 112,990 - BWI76_RS00555 0.55 +0.5 112,991 - BWI76_RS00555 0.55 -0.0 112,991 - BWI76_RS00555 0.55 +0.0 112,991 - BWI76_RS00555 0.55 +0.0 112,991 - BWI76_RS00555 0.55 +0.1 112,991 - BWI76_RS00555 0.55 +0.3 112,991 - BWI76_RS00555 0.55 -0.6 112,991 - BWI76_RS00555 0.55 -0.1 113,073 - BWI76_RS00555 0.74 -0.8 113,073 - BWI76_RS00555 0.74 -1.5 113,079 + BWI76_RS00555 0.76 +0.1 113,110 - BWI76_RS00555 0.83 -0.3 113,157 + -0.2 113,157 + -0.3 113,165 - -0.2 113,165 - -0.0 113,168 - -0.1 113,179 + -0.4 113,179 + -0.2 113,187 - +1.2 113,193 + -0.4 113,309 + BWI76_RS00560 0.23 +0.3 113,346 + BWI76_RS00560 0.30 -0.8 113,540 + BWI76_RS00560 0.65 -0.6 113,590 - BWI76_RS00560 0.74 +0.0 113,686 + -0.2 113,702 - -0.4
Or see this region's nucleotide sequence