Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22775

Experiment: KLEB25 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22765 and BWI76_RS22770 are separated by 346 nucleotidesBWI76_RS22770 and BWI76_RS22775 overlap by 72 nucleotidesBWI76_RS22775 and BWI76_RS22780 are separated by 56 nucleotides BWI76_RS22765: BWI76_RS22765 - sulfite reductase subunit alpha, at 4,745,693 to 4,747,492 _RS22765 BWI76_RS22770: BWI76_RS22770 - 6-pyruvoyl tetrahydrobiopterin synthase, at 4,747,839 to 4,748,000 _RS22770 BWI76_RS22775: BWI76_RS22775 - 6-carboxytetrahydropterin synthase QueD, at 4,747,929 to 4,748,291 _RS22775 BWI76_RS22780: BWI76_RS22780 - 7-carboxy-7-deazaguanine synthase QueE, at 4,748,348 to 4,749,019 _RS22780 Position (kb) 4747 4748 4749Strain fitness (log2 ratio) -2 -1 0 1 2at 4747.131 kb on - strand, within BWI76_RS22765at 4747.134 kb on - strand, within BWI76_RS22765at 4747.136 kb on - strand, within BWI76_RS22765at 4747.136 kb on - strand, within BWI76_RS22765at 4747.146 kb on - strand, within BWI76_RS22765at 4747.218 kb on - strand, within BWI76_RS22765at 4747.324 kb on + strandat 4747.332 kb on - strandat 4747.376 kb on - strandat 4747.376 kb on - strandat 4747.498 kb on + strandat 4747.519 kb on - strandat 4747.612 kb on + strandat 4747.612 kb on + strandat 4747.612 kb on + strandat 4747.613 kb on - strandat 4747.620 kb on - strandat 4747.620 kb on - strandat 4747.620 kb on - strandat 4747.620 kb on - strandat 4747.677 kb on + strandat 4747.692 kb on - strandat 4747.943 kb on + strandat 4747.943 kb on + strandat 4747.943 kb on + strandat 4747.957 kb on + strandat 4747.968 kb on + strandat 4748.026 kb on + strand, within BWI76_RS22775at 4748.096 kb on + strand, within BWI76_RS22775at 4748.096 kb on + strand, within BWI76_RS22775at 4748.165 kb on + strand, within BWI76_RS22775at 4748.187 kb on - strand, within BWI76_RS22775at 4748.330 kb on - strandat 4748.401 kb on - strandat 4748.468 kb on - strand, within BWI76_RS22780at 4748.605 kb on + strand, within BWI76_RS22780at 4748.613 kb on - strand, within BWI76_RS22780at 4748.627 kb on + strand, within BWI76_RS22780at 4748.635 kb on - strand, within BWI76_RS22780at 4748.635 kb on - strand, within BWI76_RS22780at 4748.774 kb on - strand, within BWI76_RS22780at 4748.779 kb on - strand, within BWI76_RS22780at 4748.833 kb on + strand, within BWI76_RS22780at 4748.884 kb on + strand, within BWI76_RS22780at 4748.972 kb on + strandat 4748.974 kb on - strandat 4748.987 kb on + strandat 4748.988 kb on + strandat 4748.996 kb on - strandat 4749.014 kb on - strandat 4749.030 kb on + strandat 4749.068 kb on + strandat 4749.073 kb on + strandat 4749.073 kb on + strandat 4749.079 kb on + strandat 4749.081 kb on - strandat 4749.082 kb on - strandat 4749.084 kb on + strandat 4749.118 kb on + strandat 4749.126 kb on - strandat 4749.128 kb on + strandat 4749.134 kb on - strandat 4749.134 kb on - strandat 4749.156 kb on - strandat 4749.196 kb on + strandat 4749.204 kb on - strandat 4749.204 kb on - strandat 4749.238 kb on + strandat 4749.238 kb on + strandat 4749.238 kb on + strandat 4749.246 kb on - strandat 4749.246 kb on - strandat 4749.246 kb on - strandat 4749.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB25 MOI 0.1
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4,747,131 - BWI76_RS22765 0.80 +0.6
4,747,134 - BWI76_RS22765 0.80 +0.3
4,747,136 - BWI76_RS22765 0.80 -0.2
4,747,136 - BWI76_RS22765 0.80 -0.1
4,747,146 - BWI76_RS22765 0.81 -1.9
4,747,218 - BWI76_RS22765 0.85 -0.9
4,747,324 + -0.6
4,747,332 - -0.6
4,747,376 - +0.3
4,747,376 - +0.0
4,747,498 + +2.3
4,747,519 - -0.1
4,747,612 + -1.2
4,747,612 + +0.1
4,747,612 + -0.9
4,747,613 - -0.1
4,747,620 - -1.2
4,747,620 - +0.2
4,747,620 - -0.4
4,747,620 - +0.0
4,747,677 + -0.0
4,747,692 - -0.0
4,747,943 + -0.1
4,747,943 + +0.2
4,747,943 + -0.3
4,747,957 + -0.3
4,747,968 + +0.1
4,748,026 + BWI76_RS22775 0.27 -0.6
4,748,096 + BWI76_RS22775 0.46 -0.4
4,748,096 + BWI76_RS22775 0.46 -0.1
4,748,165 + BWI76_RS22775 0.65 -0.3
4,748,187 - BWI76_RS22775 0.71 -1.7
4,748,330 - +0.1
4,748,401 - -0.1
4,748,468 - BWI76_RS22780 0.18 -0.3
4,748,605 + BWI76_RS22780 0.38 +0.4
4,748,613 - BWI76_RS22780 0.39 +0.1
4,748,627 + BWI76_RS22780 0.42 +0.0
4,748,635 - BWI76_RS22780 0.43 -0.0
4,748,635 - BWI76_RS22780 0.43 -0.3
4,748,774 - BWI76_RS22780 0.63 -0.5
4,748,779 - BWI76_RS22780 0.64 -0.6
4,748,833 + BWI76_RS22780 0.72 -1.1
4,748,884 + BWI76_RS22780 0.80 -0.2
4,748,972 + -0.4
4,748,974 - -0.7
4,748,987 + -0.2
4,748,988 + -0.2
4,748,996 - -0.4
4,749,014 - -0.7
4,749,030 + +0.7
4,749,068 + +0.1
4,749,073 + -0.2
4,749,073 + -0.3
4,749,079 + -0.9
4,749,081 - -0.2
4,749,082 - +0.3
4,749,084 + -0.1
4,749,118 + -0.2
4,749,126 - -0.2
4,749,128 + +0.2
4,749,134 - -0.7
4,749,134 - -0.8
4,749,156 - +0.3
4,749,196 + -1.0
4,749,204 - -0.4
4,749,204 - +0.1
4,749,238 + -0.7
4,749,238 + -0.0
4,749,238 + -1.9
4,749,246 - +0.3
4,749,246 - -0.1
4,749,246 - -0.8
4,749,246 - -0.4

Or see this region's nucleotide sequence