Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15590

Experiment: KLEB25 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15575 and BWI76_RS15580 overlap by 11 nucleotidesBWI76_RS15580 and BWI76_RS15585 are separated by 112 nucleotidesBWI76_RS15585 and BWI76_RS15590 are separated by 182 nucleotidesBWI76_RS15590 and BWI76_RS15595 are separated by 59 nucleotidesBWI76_RS15595 and BWI76_RS15600 are separated by 58 nucleotides BWI76_RS15575: BWI76_RS15575 - hypothetical protein, at 3,261,710 to 3,262,429 _RS15575 BWI76_RS15580: BWI76_RS15580 - putative transcriptional repressor arc (modular protein), at 3,262,419 to 3,262,592 _RS15580 BWI76_RS15585: BWI76_RS15585 - DNA-binding protein, at 3,262,705 to 3,263,067 _RS15585 BWI76_RS15590: BWI76_RS15590 - hypothetical protein, at 3,263,250 to 3,263,957 _RS15590 BWI76_RS15595: BWI76_RS15595 - hypothetical protein, at 3,264,017 to 3,264,781 _RS15595 BWI76_RS15600: BWI76_RS15600 - hypothetical protein, at 3,264,840 to 3,265,223 _RS15600 Position (kb) 3263 3264Strain fitness (log2 ratio) -2 -1 0 1at 3262.267 kb on + strand, within BWI76_RS15575at 3262.308 kb on - strand, within BWI76_RS15575at 3262.338 kb on - strand, within BWI76_RS15575at 3262.341 kb on - strand, within BWI76_RS15575at 3262.400 kb on + strandat 3262.408 kb on - strandat 3262.702 kb on + strandat 3263.301 kb on + strandat 3263.403 kb on + strand, within BWI76_RS15590at 3263.516 kb on + strand, within BWI76_RS15590at 3263.693 kb on - strand, within BWI76_RS15590at 3263.836 kb on - strand, within BWI76_RS15590at 3264.104 kb on - strand, within BWI76_RS15595at 3264.185 kb on + strand, within BWI76_RS15595at 3264.185 kb on + strand, within BWI76_RS15595at 3264.312 kb on + strand, within BWI76_RS15595at 3264.444 kb on - strand, within BWI76_RS15595at 3264.675 kb on - strand, within BWI76_RS15595at 3264.713 kb on + strandat 3264.721 kb on - strandat 3264.721 kb on - strandat 3264.721 kb on - strandat 3264.721 kb on - strandat 3264.781 kb on - strandat 3264.869 kb on + strandat 3264.898 kb on + strand, within BWI76_RS15600

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB25 MOI 1
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3,262,267 + BWI76_RS15575 0.77 +0.1
3,262,308 - BWI76_RS15575 0.83 -0.3
3,262,338 - BWI76_RS15575 0.87 -0.1
3,262,341 - BWI76_RS15575 0.88 +0.1
3,262,400 + -1.0
3,262,408 - -0.9
3,262,702 + -2.1
3,263,301 + -1.1
3,263,403 + BWI76_RS15590 0.22 -1.4
3,263,516 + BWI76_RS15590 0.38 -0.4
3,263,693 - BWI76_RS15590 0.63 -1.5
3,263,836 - BWI76_RS15590 0.83 -0.3
3,264,104 - BWI76_RS15595 0.11 -1.3
3,264,185 + BWI76_RS15595 0.22 -0.2
3,264,185 + BWI76_RS15595 0.22 +0.6
3,264,312 + BWI76_RS15595 0.39 +0.3
3,264,444 - BWI76_RS15595 0.56 -1.0
3,264,675 - BWI76_RS15595 0.86 -0.5
3,264,713 + -0.1
3,264,721 - +0.8
3,264,721 - -0.7
3,264,721 - -0.7
3,264,721 - +0.6
3,264,781 - -1.2
3,264,869 + +0.2
3,264,898 + BWI76_RS15600 0.15 +0.5

Or see this region's nucleotide sequence