Experiment: KLEB15 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21735 and BWI76_RS21740 are separated by 116 nucleotides BWI76_RS21740 and BWI76_RS21745 are separated by 185 nucleotides
BWI76_RS21735: BWI76_RS21735 - aldehyde oxidase, at 4,542,789 to 4,543,754
_RS21735
BWI76_RS21740: BWI76_RS21740 - transcriptional regulator, LysR family protein, at 4,543,871 to 4,544,764
_RS21740
BWI76_RS21745: BWI76_RS21745 - LysR family transcriptional regulator, at 4,544,950 to 4,545,837
_RS21745
Position (kb)
4543
4544
4545 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4542.902 kb on + strand, within BWI76_RS21735 at 4542.910 kb on - strand, within BWI76_RS21735 at 4542.928 kb on + strand, within BWI76_RS21735 at 4542.936 kb on - strand, within BWI76_RS21735 at 4542.936 kb on - strand, within BWI76_RS21735 at 4542.936 kb on - strand, within BWI76_RS21735 at 4543.006 kb on + strand, within BWI76_RS21735 at 4543.089 kb on + strand, within BWI76_RS21735 at 4543.091 kb on - strand, within BWI76_RS21735 at 4543.099 kb on + strand, within BWI76_RS21735 at 4543.122 kb on - strand, within BWI76_RS21735 at 4543.195 kb on + strand, within BWI76_RS21735 at 4543.195 kb on + strand, within BWI76_RS21735 at 4543.203 kb on - strand, within BWI76_RS21735 at 4543.203 kb on - strand, within BWI76_RS21735 at 4543.249 kb on + strand, within BWI76_RS21735 at 4543.410 kb on - strand, within BWI76_RS21735 at 4543.458 kb on + strand, within BWI76_RS21735 at 4543.563 kb on - strand, within BWI76_RS21735 at 4543.627 kb on - strand, within BWI76_RS21735 at 4543.627 kb on - strand, within BWI76_RS21735 at 4543.664 kb on - strand at 4543.691 kb on - strand at 4543.731 kb on - strand at 4543.801 kb on + strand at 4543.801 kb on + strand at 4543.809 kb on - strand at 4543.956 kb on - strand at 4544.193 kb on - strand, within BWI76_RS21740 at 4544.230 kb on + strand, within BWI76_RS21740 at 4544.378 kb on - strand, within BWI76_RS21740 at 4544.485 kb on + strand, within BWI76_RS21740 at 4544.696 kb on - strand at 4544.702 kb on - strand at 4544.755 kb on + strand at 4544.820 kb on + strand at 4544.828 kb on - strand at 4545.017 kb on + strand at 4545.025 kb on - strand at 4545.049 kb on - strand, within BWI76_RS21745 at 4545.083 kb on - strand, within BWI76_RS21745 at 4545.176 kb on + strand, within BWI76_RS21745 at 4545.185 kb on + strand, within BWI76_RS21745 at 4545.194 kb on + strand, within BWI76_RS21745 at 4545.202 kb on - strand, within BWI76_RS21745 at 4545.299 kb on - strand, within BWI76_RS21745 at 4545.336 kb on + strand at 4545.381 kb on + strand, within BWI76_RS21745 at 4545.418 kb on + strand, within BWI76_RS21745 at 4545.418 kb on + strand at 4545.426 kb on - strand, within BWI76_RS21745 at 4545.427 kb on + strand, within BWI76_RS21745 at 4545.428 kb on + strand, within BWI76_RS21745 at 4545.515 kb on - strand at 4545.646 kb on - strand, within BWI76_RS21745 at 4545.660 kb on + strand, within BWI76_RS21745 at 4545.668 kb on - strand, within BWI76_RS21745 at 4545.668 kb on - strand, within BWI76_RS21745 at 4545.673 kb on - strand, within BWI76_RS21745 at 4545.673 kb on - strand, within BWI76_RS21745 at 4545.702 kb on + strand, within BWI76_RS21745
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1 remove 4,542,902 + BWI76_RS21735 0.12 -1.3 4,542,910 - BWI76_RS21735 0.13 -0.7 4,542,928 + BWI76_RS21735 0.14 -1.0 4,542,936 - BWI76_RS21735 0.15 -0.1 4,542,936 - BWI76_RS21735 0.15 +0.1 4,542,936 - BWI76_RS21735 0.15 -2.5 4,543,006 + BWI76_RS21735 0.22 -0.1 4,543,089 + BWI76_RS21735 0.31 +0.6 4,543,091 - BWI76_RS21735 0.31 -0.2 4,543,099 + BWI76_RS21735 0.32 -0.2 4,543,122 - BWI76_RS21735 0.34 -1.3 4,543,195 + BWI76_RS21735 0.42 -0.1 4,543,195 + BWI76_RS21735 0.42 -0.4 4,543,203 - BWI76_RS21735 0.43 -0.5 4,543,203 - BWI76_RS21735 0.43 -0.8 4,543,249 + BWI76_RS21735 0.48 +0.1 4,543,410 - BWI76_RS21735 0.64 -0.1 4,543,458 + BWI76_RS21735 0.69 -0.0 4,543,563 - BWI76_RS21735 0.80 +0.1 4,543,627 - BWI76_RS21735 0.87 +1.0 4,543,627 - BWI76_RS21735 0.87 -0.7 4,543,664 - -0.3 4,543,691 - -0.8 4,543,731 - -0.0 4,543,801 + -0.0 4,543,801 + +0.2 4,543,809 - -0.1 4,543,956 - +0.8 4,544,193 - BWI76_RS21740 0.36 -0.3 4,544,230 + BWI76_RS21740 0.40 -0.2 4,544,378 - BWI76_RS21740 0.57 -0.0 4,544,485 + BWI76_RS21740 0.69 -1.0 4,544,696 - +0.3 4,544,702 - -0.3 4,544,755 + +1.8 4,544,820 + +0.2 4,544,828 - +0.2 4,545,017 + -0.5 4,545,025 - +0.2 4,545,049 - BWI76_RS21745 0.11 +1.0 4,545,083 - BWI76_RS21745 0.15 -0.9 4,545,176 + BWI76_RS21745 0.25 -0.3 4,545,185 + BWI76_RS21745 0.26 -0.7 4,545,194 + BWI76_RS21745 0.27 -0.7 4,545,202 - BWI76_RS21745 0.28 -0.5 4,545,299 - BWI76_RS21745 0.39 -0.4 4,545,336 + +0.8 4,545,381 + BWI76_RS21745 0.49 -0.5 4,545,418 + BWI76_RS21745 0.53 +0.0 4,545,418 + -0.5 4,545,426 - BWI76_RS21745 0.54 -0.3 4,545,427 + BWI76_RS21745 0.54 -0.2 4,545,428 + BWI76_RS21745 0.54 -0.4 4,545,515 - +0.3 4,545,646 - BWI76_RS21745 0.78 +0.2 4,545,660 + BWI76_RS21745 0.80 -0.7 4,545,668 - BWI76_RS21745 0.81 +0.3 4,545,668 - BWI76_RS21745 0.81 +0.4 4,545,673 - BWI76_RS21745 0.81 -0.4 4,545,673 - BWI76_RS21745 0.81 -0.1 4,545,702 + BWI76_RS21745 0.85 -0.2
Or see this region's nucleotide sequence