Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19960

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19955 and BWI76_RS19960 are separated by 9 nucleotidesBWI76_RS19960 and BWI76_RS19965 are separated by 271 nucleotides BWI76_RS19955: BWI76_RS19955 - glycerophosphoryl diester phosphodiesterase, at 4,179,031 to 4,180,101 _RS19955 BWI76_RS19960: BWI76_RS19960 - MFS transporter, at 4,180,111 to 4,181,457 _RS19960 BWI76_RS19965: BWI76_RS19965 - sn-glycerol-3-phosphate dehydrogenase subunit A, at 4,181,729 to 4,183,351 _RS19965 Position (kb) 4180 4181 4182Strain fitness (log2 ratio) -1 0 1at 4179.269 kb on - strand, within BWI76_RS19955at 4179.346 kb on - strand, within BWI76_RS19955at 4179.401 kb on + strand, within BWI76_RS19955at 4179.409 kb on - strand, within BWI76_RS19955at 4179.461 kb on + strand, within BWI76_RS19955at 4179.562 kb on - strand, within BWI76_RS19955at 4179.678 kb on - strand, within BWI76_RS19955at 4180.070 kb on + strandat 4180.636 kb on + strand, within BWI76_RS19960at 4180.880 kb on + strand, within BWI76_RS19960at 4180.972 kb on + strand, within BWI76_RS19960at 4180.980 kb on - strand, within BWI76_RS19960at 4181.202 kb on - strand, within BWI76_RS19960at 4181.202 kb on - strand, within BWI76_RS19960at 4181.531 kb on - strandat 4181.533 kb on + strandat 4181.979 kb on - strand, within BWI76_RS19965at 4182.000 kb on + strand, within BWI76_RS19965at 4182.000 kb on + strand, within BWI76_RS19965at 4182.133 kb on + strand, within BWI76_RS19965at 4182.133 kb on + strand, within BWI76_RS19965at 4182.391 kb on - strand, within BWI76_RS19965

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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4,179,269 - BWI76_RS19955 0.22 -0.3
4,179,346 - BWI76_RS19955 0.29 +0.2
4,179,401 + BWI76_RS19955 0.35 -1.4
4,179,409 - BWI76_RS19955 0.35 +0.1
4,179,461 + BWI76_RS19955 0.40 +0.5
4,179,562 - BWI76_RS19955 0.50 +0.3
4,179,678 - BWI76_RS19955 0.60 +0.1
4,180,070 + -0.5
4,180,636 + BWI76_RS19960 0.39 -0.4
4,180,880 + BWI76_RS19960 0.57 -1.1
4,180,972 + BWI76_RS19960 0.64 -0.3
4,180,980 - BWI76_RS19960 0.65 -0.3
4,181,202 - BWI76_RS19960 0.81 -0.4
4,181,202 - BWI76_RS19960 0.81 -0.6
4,181,531 - +0.3
4,181,533 + -0.3
4,181,979 - BWI76_RS19965 0.15 +0.2
4,182,000 + BWI76_RS19965 0.17 +0.3
4,182,000 + BWI76_RS19965 0.17 -0.1
4,182,133 + BWI76_RS19965 0.25 -0.1
4,182,133 + BWI76_RS19965 0.25 -0.2
4,182,391 - BWI76_RS19965 0.41 -0.2

Or see this region's nucleotide sequence