Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17085

Experiment: KLEB15 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17075 and BWI76_RS17080 are separated by 117 nucleotidesBWI76_RS17080 and BWI76_RS17085 are separated by 34 nucleotidesBWI76_RS17085 and BWI76_RS17090 are separated by 126 nucleotidesBWI76_RS17090 and BWI76_RS17095 are separated by 81 nucleotides BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815 _RS17075 BWI76_RS17080: BWI76_RS17080 - hypothetical protein, at 3,544,933 to 3,545,160 _RS17080 BWI76_RS17085: BWI76_RS17085 - hypothetical protein, at 3,545,195 to 3,546,637 _RS17085 BWI76_RS17090: BWI76_RS17090 - NLP/P60 protein, at 3,546,764 to 3,547,228 _RS17090 BWI76_RS17095: BWI76_RS17095 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 3,547,310 to 3,548,059 _RS17095 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -2 -1 0 1at 3544.279 kb on - strand, within BWI76_RS17075at 3544.310 kb on - strand, within BWI76_RS17075at 3544.444 kb on - strand, within BWI76_RS17075at 3545.073 kb on - strand, within BWI76_RS17080at 3545.109 kb on + strand, within BWI76_RS17080at 3545.112 kb on - strand, within BWI76_RS17080at 3545.117 kb on - strand, within BWI76_RS17080at 3545.121 kb on + strand, within BWI76_RS17080at 3545.122 kb on - strand, within BWI76_RS17080at 3545.140 kb on + strandat 3545.180 kb on - strandat 3545.385 kb on - strand, within BWI76_RS17085at 3545.420 kb on - strand, within BWI76_RS17085at 3545.599 kb on - strand, within BWI76_RS17085at 3546.020 kb on - strand, within BWI76_RS17085at 3546.160 kb on + strand, within BWI76_RS17085at 3546.257 kb on + strand, within BWI76_RS17085at 3546.374 kb on - strand, within BWI76_RS17085at 3546.465 kb on + strand, within BWI76_RS17085at 3546.547 kb on - strandat 3547.496 kb on + strand, within BWI76_RS17095at 3547.564 kb on + strand, within BWI76_RS17095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
remove
3,544,279 - BWI76_RS17075 0.49 +1.4
3,544,310 - BWI76_RS17075 0.52 +0.3
3,544,444 - BWI76_RS17075 0.64 -0.6
3,545,073 - BWI76_RS17080 0.61 -0.1
3,545,109 + BWI76_RS17080 0.77 +0.1
3,545,112 - BWI76_RS17080 0.79 +1.2
3,545,117 - BWI76_RS17080 0.81 +0.3
3,545,121 + BWI76_RS17080 0.82 +0.3
3,545,122 - BWI76_RS17080 0.83 +0.2
3,545,140 + +0.1
3,545,180 - +0.8
3,545,385 - BWI76_RS17085 0.13 -2.2
3,545,420 - BWI76_RS17085 0.16 -0.4
3,545,599 - BWI76_RS17085 0.28 -0.3
3,546,020 - BWI76_RS17085 0.57 -1.1
3,546,160 + BWI76_RS17085 0.67 +0.7
3,546,257 + BWI76_RS17085 0.74 +0.1
3,546,374 - BWI76_RS17085 0.82 -0.6
3,546,465 + BWI76_RS17085 0.88 -1.3
3,546,547 - -0.6
3,547,496 + BWI76_RS17095 0.25 +0.3
3,547,564 + BWI76_RS17095 0.34 -0.1

Or see this region's nucleotide sequence