Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12700

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12695 and BWI76_RS12700 are separated by 277 nucleotidesBWI76_RS12700 and BWI76_RS12705 overlap by 50 nucleotides BWI76_RS12695: BWI76_RS12695 - zinc transporter ZntB, at 2,646,758 to 2,647,741 _RS12695 BWI76_RS12700: BWI76_RS12700 - hypothetical protein, at 2,648,019 to 2,648,273 _RS12700 BWI76_RS12705: BWI76_RS12705 - ATP-dependent RNA helicase, at 2,648,224 to 2,649,597 _RS12705 Position (kb) 2648 2649Strain fitness (log2 ratio) -1 0 1at 2647.035 kb on - strand, within BWI76_RS12695at 2647.127 kb on + strand, within BWI76_RS12695at 2647.398 kb on + strand, within BWI76_RS12695at 2647.475 kb on - strand, within BWI76_RS12695at 2647.581 kb on + strand, within BWI76_RS12695at 2647.706 kb on + strandat 2647.840 kb on + strandat 2647.864 kb on + strandat 2647.872 kb on - strandat 2648.068 kb on + strand, within BWI76_RS12700at 2648.076 kb on - strand, within BWI76_RS12700at 2648.396 kb on + strand, within BWI76_RS12705at 2648.424 kb on - strand, within BWI76_RS12705at 2648.438 kb on - strand, within BWI76_RS12705at 2648.438 kb on - strand, within BWI76_RS12705at 2648.662 kb on + strand, within BWI76_RS12705at 2648.673 kb on + strand, within BWI76_RS12705at 2648.815 kb on + strand, within BWI76_RS12705at 2649.044 kb on + strand, within BWI76_RS12705at 2649.044 kb on + strand, within BWI76_RS12705

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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2,647,035 - BWI76_RS12695 0.28 +1.4
2,647,127 + BWI76_RS12695 0.38 +0.7
2,647,398 + BWI76_RS12695 0.65 -0.5
2,647,475 - BWI76_RS12695 0.73 -0.8
2,647,581 + BWI76_RS12695 0.84 +0.0
2,647,706 + +0.5
2,647,840 + +0.1
2,647,864 + +0.2
2,647,872 - -0.2
2,648,068 + BWI76_RS12700 0.19 -0.6
2,648,076 - BWI76_RS12700 0.22 -0.6
2,648,396 + BWI76_RS12705 0.13 -0.3
2,648,424 - BWI76_RS12705 0.15 -0.2
2,648,438 - BWI76_RS12705 0.16 +0.5
2,648,438 - BWI76_RS12705 0.16 -0.8
2,648,662 + BWI76_RS12705 0.32 -0.1
2,648,673 + BWI76_RS12705 0.33 -0.6
2,648,815 + BWI76_RS12705 0.43 +0.1
2,649,044 + BWI76_RS12705 0.60 -0.5
2,649,044 + BWI76_RS12705 0.60 +0.2

Or see this region's nucleotide sequence