Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12080

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12070 and BWI76_RS12075 are separated by 284 nucleotidesBWI76_RS12075 and BWI76_RS12080 are separated by 140 nucleotidesBWI76_RS12080 and BWI76_RS12085 are separated by 2 nucleotidesBWI76_RS12085 and BWI76_RS12090 are separated by 11 nucleotides BWI76_RS12070: BWI76_RS12070 - hypothetical protein, at 2,537,367 to 2,537,561 _RS12070 BWI76_RS12075: BWI76_RS12075 - regulator, at 2,537,846 to 2,538,406 _RS12075 BWI76_RS12080: BWI76_RS12080 - hypothetical protein, at 2,538,547 to 2,538,777 _RS12080 BWI76_RS12085: BWI76_RS12085 - regulatory protein CII from bacteriophage origin, at 2,538,780 to 2,539,316 _RS12085 BWI76_RS12090: BWI76_RS12090 - HNH endonuclease, at 2,539,328 to 2,539,831 _RS12090 Position (kb) 2538 2539Strain fitness (log2 ratio) -1 0 1 2at 2537.559 kb on - strandat 2537.608 kb on + strandat 2537.697 kb on + strandat 2538.634 kb on - strand, within BWI76_RS12080at 2538.687 kb on + strand, within BWI76_RS12080at 2538.703 kb on - strand, within BWI76_RS12080at 2538.778 kb on - strandat 2538.860 kb on + strand, within BWI76_RS12085at 2538.880 kb on - strand, within BWI76_RS12085at 2538.900 kb on - strand, within BWI76_RS12085at 2538.983 kb on + strand, within BWI76_RS12085at 2538.983 kb on + strand, within BWI76_RS12085at 2538.991 kb on - strand, within BWI76_RS12085at 2539.183 kb on + strand, within BWI76_RS12085at 2539.188 kb on + strand, within BWI76_RS12085at 2539.258 kb on + strand, within BWI76_RS12085at 2539.273 kb on - strandat 2539.278 kb on + strandat 2539.302 kb on - strandat 2539.339 kb on - strandat 2539.339 kb on - strandat 2539.500 kb on - strand, within BWI76_RS12090at 2539.558 kb on + strand, within BWI76_RS12090at 2539.566 kb on - strand, within BWI76_RS12090at 2539.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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2,537,559 - -0.2
2,537,608 + -0.9
2,537,697 + +0.1
2,538,634 - BWI76_RS12080 0.38 -0.3
2,538,687 + BWI76_RS12080 0.61 -1.1
2,538,703 - BWI76_RS12080 0.68 -0.5
2,538,778 - -0.2
2,538,860 + BWI76_RS12085 0.15 +0.4
2,538,880 - BWI76_RS12085 0.19 +0.1
2,538,900 - BWI76_RS12085 0.22 -0.1
2,538,983 + BWI76_RS12085 0.38 +0.7
2,538,983 + BWI76_RS12085 0.38 +0.1
2,538,991 - BWI76_RS12085 0.39 -0.9
2,539,183 + BWI76_RS12085 0.75 +0.4
2,539,188 + BWI76_RS12085 0.76 +1.1
2,539,258 + BWI76_RS12085 0.89 +1.5
2,539,273 - -0.2
2,539,278 + +0.3
2,539,302 - +0.5
2,539,339 - +0.3
2,539,339 - +2.0
2,539,500 - BWI76_RS12090 0.34 -0.1
2,539,558 + BWI76_RS12090 0.46 +0.5
2,539,566 - BWI76_RS12090 0.47 +0.0
2,539,723 + +0.4

Or see this region's nucleotide sequence