Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06505

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06500 and BWI76_RS06505 are separated by 45 nucleotidesBWI76_RS06505 and BWI76_RS06510 are separated by 303 nucleotidesBWI76_RS06510 and BWI76_RS06515 overlap by 41 nucleotidesBWI76_RS06515 and BWI76_RS06520 are separated by 207 nucleotides BWI76_RS06500: BWI76_RS06500 - muropeptide transporter AmpG, at 1,365,804 to 1,367,279 _RS06500 BWI76_RS06505: BWI76_RS06505 - hypothetical protein, at 1,367,325 to 1,367,903 _RS06505 BWI76_RS06510: BWI76_RS06510 - BolA family transcriptional regulator, at 1,368,207 to 1,368,524 _RS06510 BWI76_RS06515: BWI76_RS06515 - hypothetical protein, at 1,368,484 to 1,368,664 _RS06515 BWI76_RS06520: BWI76_RS06520 - trigger factor, at 1,368,872 to 1,370,170 _RS06520 Position (kb) 1367 1368Strain fitness (log2 ratio) -2 -1 0 1at 1366.327 kb on + strand, within BWI76_RS06500at 1366.389 kb on - strand, within BWI76_RS06500at 1366.401 kb on - strand, within BWI76_RS06500at 1366.413 kb on + strand, within BWI76_RS06500at 1366.441 kb on + strand, within BWI76_RS06500at 1366.550 kb on + strand, within BWI76_RS06500at 1366.598 kb on + strand, within BWI76_RS06500at 1366.830 kb on - strand, within BWI76_RS06500at 1367.101 kb on + strand, within BWI76_RS06500at 1367.109 kb on - strand, within BWI76_RS06500at 1367.394 kb on - strand, within BWI76_RS06505at 1367.722 kb on + strand, within BWI76_RS06505at 1367.825 kb on + strand, within BWI76_RS06505at 1367.840 kb on + strand, within BWI76_RS06505at 1367.860 kb on + strandat 1368.159 kb on + strandat 1368.214 kb on + strandat 1368.244 kb on - strand, within BWI76_RS06510at 1368.276 kb on + strand, within BWI76_RS06510at 1368.416 kb on - strandat 1368.456 kb on - strand, within BWI76_RS06510at 1368.458 kb on - strand, within BWI76_RS06510at 1368.458 kb on - strand, within BWI76_RS06510at 1368.507 kb on + strandat 1368.515 kb on - strandat 1368.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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1,366,327 + BWI76_RS06500 0.35 -0.1
1,366,389 - BWI76_RS06500 0.40 -0.1
1,366,401 - BWI76_RS06500 0.40 -0.1
1,366,413 + BWI76_RS06500 0.41 -0.1
1,366,441 + BWI76_RS06500 0.43 +1.0
1,366,550 + BWI76_RS06500 0.51 -0.1
1,366,598 + BWI76_RS06500 0.54 -0.4
1,366,830 - BWI76_RS06500 0.70 -1.3
1,367,101 + BWI76_RS06500 0.88 -0.5
1,367,109 - BWI76_RS06500 0.88 -0.7
1,367,394 - BWI76_RS06505 0.12 -1.0
1,367,722 + BWI76_RS06505 0.69 -0.5
1,367,825 + BWI76_RS06505 0.86 -0.3
1,367,840 + BWI76_RS06505 0.89 -0.3
1,367,860 + -0.1
1,368,159 + -1.8
1,368,214 + +0.1
1,368,244 - BWI76_RS06510 0.12 -0.5
1,368,276 + BWI76_RS06510 0.22 +0.2
1,368,416 - -0.8
1,368,456 - BWI76_RS06510 0.78 -0.9
1,368,458 - BWI76_RS06510 0.79 -0.8
1,368,458 - BWI76_RS06510 0.79 +0.0
1,368,507 + -0.3
1,368,515 - -0.1
1,368,807 - -0.6

Or see this region's nucleotide sequence