Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16945

Experiment: KLEB15 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16940 and BWI76_RS16945 are separated by 79 nucleotidesBWI76_RS16945 and BWI76_RS16950 are separated by 126 nucleotidesBWI76_RS16950 and BWI76_RS16955 are separated by 26 nucleotides BWI76_RS16940: BWI76_RS16940 - MFS transporter, at 3,512,796 to 3,514,115 _RS16940 BWI76_RS16945: BWI76_RS16945 - 4-hydroxyphenylpyruvate dioxygenase, at 3,514,195 to 3,516,048 _RS16945 BWI76_RS16950: BWI76_RS16950 - TetR family transcriptional regulator, at 3,516,175 to 3,516,813 _RS16950 BWI76_RS16955: BWI76_RS16955 - hypothetical protein, at 3,516,840 to 3,517,052 _RS16955 Position (kb) 3514 3515 3516 3517Strain fitness (log2 ratio) -1 0 1at 3513.503 kb on + strand, within BWI76_RS16940at 3513.684 kb on - strand, within BWI76_RS16940at 3513.762 kb on - strand, within BWI76_RS16940at 3513.906 kb on + strand, within BWI76_RS16940at 3513.956 kb on - strand, within BWI76_RS16940at 3513.981 kb on + strand, within BWI76_RS16940at 3514.156 kb on - strandat 3514.204 kb on + strandat 3515.508 kb on + strand, within BWI76_RS16945at 3515.633 kb on + strand, within BWI76_RS16945at 3515.641 kb on - strand, within BWI76_RS16945at 3515.670 kb on - strand, within BWI76_RS16945at 3516.302 kb on + strand, within BWI76_RS16950at 3516.427 kb on + strand, within BWI76_RS16950at 3516.469 kb on + strand, within BWI76_RS16950at 3516.965 kb on + strand, within BWI76_RS16955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
remove
3,513,503 + BWI76_RS16940 0.54 -0.1
3,513,684 - BWI76_RS16940 0.67 -0.1
3,513,762 - BWI76_RS16940 0.73 +0.4
3,513,906 + BWI76_RS16940 0.84 +0.9
3,513,956 - BWI76_RS16940 0.88 -0.2
3,513,981 + BWI76_RS16940 0.90 -0.9
3,514,156 - +0.4
3,514,204 + +0.9
3,515,508 + BWI76_RS16945 0.71 -0.7
3,515,633 + BWI76_RS16945 0.78 -1.3
3,515,641 - BWI76_RS16945 0.78 -0.4
3,515,670 - BWI76_RS16945 0.80 +0.0
3,516,302 + BWI76_RS16950 0.20 -0.5
3,516,427 + BWI76_RS16950 0.39 +0.0
3,516,469 + BWI76_RS16950 0.46 +0.4
3,516,965 + BWI76_RS16955 0.59 -0.7

Or see this region's nucleotide sequence