Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15720

Experiment: KLEB15 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15710 and BWI76_RS15715 are separated by 133 nucleotidesBWI76_RS15715 and BWI76_RS15720 overlap by 8 nucleotidesBWI76_RS15720 and BWI76_RS15725 overlap by 1 nucleotidesBWI76_RS15725 and BWI76_RS15730 are separated by 260 nucleotidesBWI76_RS15730 and BWI76_RS15735 overlap by 8 nucleotides BWI76_RS15710: BWI76_RS15710 - phage antitermination protein Q, at 3,277,897 to 3,278,586 _RS15710 BWI76_RS15715: BWI76_RS15715 - putative ninG protein, at 3,278,720 to 3,279,358 _RS15715 BWI76_RS15720: BWI76_RS15720 - prophage protein NinE, at 3,279,351 to 3,279,521 _RS15720 BWI76_RS15725: BWI76_RS15725 - hypothetical protein, at 3,279,521 to 3,279,976 _RS15725 BWI76_RS15730: BWI76_RS15730 - hypothetical protein, at 3,280,237 to 3,280,467 _RS15730 BWI76_RS15735: BWI76_RS15735 - hypothetical protein, at 3,280,460 to 3,281,005 _RS15735 Position (kb) 3279 3280Strain fitness (log2 ratio) -1 0 1at 3278.372 kb on + strand, within BWI76_RS15710at 3278.474 kb on - strand, within BWI76_RS15710at 3278.608 kb on - strandat 3278.656 kb on - strandat 3278.863 kb on - strand, within BWI76_RS15715at 3279.374 kb on - strand, within BWI76_RS15720at 3279.448 kb on - strand, within BWI76_RS15720at 3279.550 kb on - strandat 3279.838 kb on + strand, within BWI76_RS15725at 3279.846 kb on - strand, within BWI76_RS15725at 3279.864 kb on + strand, within BWI76_RS15725at 3279.949 kb on + strandat 3280.350 kb on - strand, within BWI76_RS15730at 3280.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1
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3,278,372 + BWI76_RS15710 0.69 -0.4
3,278,474 - BWI76_RS15710 0.84 -0.4
3,278,608 - -0.3
3,278,656 - -0.7
3,278,863 - BWI76_RS15715 0.22 -0.4
3,279,374 - BWI76_RS15720 0.13 -1.2
3,279,448 - BWI76_RS15720 0.57 -0.2
3,279,550 - -0.2
3,279,838 + BWI76_RS15725 0.70 -1.0
3,279,846 - BWI76_RS15725 0.71 -0.4
3,279,864 + BWI76_RS15725 0.75 -0.2
3,279,949 + -0.9
3,280,350 - BWI76_RS15730 0.49 -0.5
3,280,459 - -0.6

Or see this region's nucleotide sequence