Experiment: KLEB15 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13020 and BWI76_RS13025 are separated by 137 nucleotides BWI76_RS13025 and BWI76_RS13030 are separated by 214 nucleotides BWI76_RS13030 and BWI76_RS13035 are separated by 228 nucleotides
BWI76_RS13020: BWI76_RS13020 - NmrA family protein, at 2,716,832 to 2,717,821
_RS13020
BWI76_RS13025: BWI76_RS13025 - histidine phosphatase family protein, at 2,717,959 to 2,718,579
_RS13025
BWI76_RS13030: BWI76_RS13030 - site-specific recombinase, phage integrase family protein, at 2,718,794 to 2,719,396
_RS13030
BWI76_RS13035: BWI76_RS13035 - MFS transporter, at 2,719,625 to 2,721,079
_RS13035
Position (kb)
2718
2719
2720 Strain fitness (log2 ratio)
-1
0
1 at 2718.049 kb on + strand, within BWI76_RS13025 at 2718.294 kb on + strand, within BWI76_RS13025 at 2718.419 kb on + strand, within BWI76_RS13025 at 2718.503 kb on + strand, within BWI76_RS13025 at 2718.633 kb on + strand at 2718.776 kb on + strand at 2719.149 kb on + strand, within BWI76_RS13030 at 2719.174 kb on + strand, within BWI76_RS13030 at 2719.460 kb on + strand at 2719.604 kb on - strand at 2719.681 kb on - strand at 2719.692 kb on + strand at 2719.737 kb on + strand at 2719.737 kb on + strand at 2719.745 kb on - strand at 2719.745 kb on - strand at 2719.745 kb on - strand at 2719.747 kb on + strand at 2719.799 kb on + strand, within BWI76_RS13035 at 2719.807 kb on - strand, within BWI76_RS13035 at 2719.835 kb on - strand, within BWI76_RS13035 at 2720.016 kb on - strand, within BWI76_RS13035 at 2720.018 kb on + strand, within BWI76_RS13035 at 2720.026 kb on - strand, within BWI76_RS13035 at 2720.043 kb on + strand, within BWI76_RS13035 at 2720.046 kb on - strand, within BWI76_RS13035 at 2720.089 kb on + strand, within BWI76_RS13035 at 2720.108 kb on - strand, within BWI76_RS13035 at 2720.145 kb on - strand, within BWI76_RS13035 at 2720.148 kb on + strand, within BWI76_RS13035 at 2720.199 kb on + strand, within BWI76_RS13035 at 2720.226 kb on - strand, within BWI76_RS13035 at 2720.226 kb on - strand, within BWI76_RS13035 at 2720.354 kb on + strand, within BWI76_RS13035 at 2720.354 kb on + strand, within BWI76_RS13035 at 2720.369 kb on + strand, within BWI76_RS13035 at 2720.377 kb on - strand at 2720.377 kb on - strand, within BWI76_RS13035
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 0.1 remove 2,718,049 + BWI76_RS13025 0.14 -1.1 2,718,294 + BWI76_RS13025 0.54 -0.1 2,718,419 + BWI76_RS13025 0.74 -1.3 2,718,503 + BWI76_RS13025 0.88 -1.3 2,718,633 + -0.0 2,718,776 + -0.6 2,719,149 + BWI76_RS13030 0.59 -1.2 2,719,174 + BWI76_RS13030 0.63 -0.5 2,719,460 + +1.1 2,719,604 - -1.2 2,719,681 - -0.5 2,719,692 + +0.7 2,719,737 + +1.7 2,719,737 + +1.0 2,719,745 - -0.2 2,719,745 - +0.1 2,719,745 - -0.1 2,719,747 + -0.6 2,719,799 + BWI76_RS13035 0.12 -0.9 2,719,807 - BWI76_RS13035 0.13 -0.0 2,719,835 - BWI76_RS13035 0.14 +0.2 2,720,016 - BWI76_RS13035 0.27 -0.5 2,720,018 + BWI76_RS13035 0.27 +0.1 2,720,026 - BWI76_RS13035 0.28 +0.2 2,720,043 + BWI76_RS13035 0.29 -0.4 2,720,046 - BWI76_RS13035 0.29 +0.9 2,720,089 + BWI76_RS13035 0.32 -0.3 2,720,108 - BWI76_RS13035 0.33 -0.5 2,720,145 - BWI76_RS13035 0.36 -0.3 2,720,148 + BWI76_RS13035 0.36 -0.1 2,720,199 + BWI76_RS13035 0.39 -0.4 2,720,226 - BWI76_RS13035 0.41 -0.2 2,720,226 - BWI76_RS13035 0.41 -0.7 2,720,354 + BWI76_RS13035 0.50 +0.1 2,720,354 + BWI76_RS13035 0.50 -0.3 2,720,369 + BWI76_RS13035 0.51 -0.8 2,720,377 - +1.4 2,720,377 - BWI76_RS13035 0.52 +0.3
Or see this region's nucleotide sequence