Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27775 and BWI76_RS27780 are separated by 84 nucleotides BWI76_RS27780 and BWI76_RS27785 are separated by 211 nucleotides BWI76_RS27785 and BWI76_RS27790 are separated by 145 nucleotides
BWI76_RS27775: BWI76_RS27775 - transcriptional regulator, at 5,763,089 to 5,763,412
_RS27775
BWI76_RS27780: BWI76_RS27780 - hypothetical protein, at 5,763,497 to 5,763,949
_RS27780
BWI76_RS27785: BWI76_RS27785 - hexose-6-phosphate transporter; deoxyribose-5-phosphate or dAMP transporter (from data) , at 5,764,161 to 5,765,552
_RS27785
BWI76_RS27790: BWI76_RS27790 - MFS transporter family glucose-6-phosphate receptor UhpC, at 5,765,698 to 5,767,017
_RS27790
Position (kb)
5764
5765
5766 Strain fitness (log2 ratio)
-2
-1
0
1 at 5763.401 kb on - strand at 5763.417 kb on + strand at 5763.417 kb on + strand at 5763.453 kb on - strand at 5763.471 kb on + strand at 5763.550 kb on + strand, within BWI76_RS27780 at 5763.763 kb on + strand, within BWI76_RS27780 at 5763.942 kb on - strand at 5763.942 kb on - strand at 5764.074 kb on - strand at 5764.095 kb on - strand at 5764.095 kb on - strand at 5764.158 kb on + strand at 5764.177 kb on + strand at 5764.279 kb on - strand at 5764.387 kb on - strand, within BWI76_RS27785 at 5764.473 kb on - strand, within BWI76_RS27785 at 5764.571 kb on - strand, within BWI76_RS27785 at 5764.646 kb on + strand, within BWI76_RS27785 at 5764.710 kb on + strand, within BWI76_RS27785 at 5764.845 kb on - strand, within BWI76_RS27785 at 5765.013 kb on - strand, within BWI76_RS27785 at 5765.077 kb on + strand, within BWI76_RS27785 at 5765.129 kb on + strand, within BWI76_RS27785 at 5765.129 kb on + strand, within BWI76_RS27785 at 5765.161 kb on + strand, within BWI76_RS27785 at 5765.188 kb on - strand, within BWI76_RS27785 at 5765.257 kb on + strand, within BWI76_RS27785 at 5765.257 kb on + strand, within BWI76_RS27785 at 5765.262 kb on + strand, within BWI76_RS27785 at 5765.315 kb on + strand, within BWI76_RS27785 at 5765.315 kb on + strand, within BWI76_RS27785 at 5765.323 kb on - strand at 5765.401 kb on + strand, within BWI76_RS27785 at 5765.455 kb on + strand at 5765.463 kb on - strand at 5765.510 kb on + strand at 5765.516 kb on + strand at 5765.516 kb on + strand at 5765.518 kb on - strand at 5765.519 kb on - strand at 5765.519 kb on - strand at 5765.542 kb on - strand at 5765.542 kb on - strand at 5765.563 kb on + strand at 5765.563 kb on + strand at 5765.571 kb on - strand at 5765.573 kb on + strand at 5765.697 kb on + strand at 5766.187 kb on - strand, within BWI76_RS27790 at 5766.227 kb on + strand, within BWI76_RS27790 at 5766.227 kb on + strand, within BWI76_RS27790 at 5766.235 kb on - strand, within BWI76_RS27790 at 5766.237 kb on - strand, within BWI76_RS27790 at 5766.307 kb on + strand, within BWI76_RS27790 at 5766.307 kb on + strand, within BWI76_RS27790 at 5766.308 kb on - strand, within BWI76_RS27790 at 5766.462 kb on - strand, within BWI76_RS27790 at 5766.536 kb on + strand, within BWI76_RS27790 at 5766.544 kb on - strand, within BWI76_RS27790 at 5766.546 kb on + strand, within BWI76_RS27790
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 5,763,401 - +0.6 5,763,417 + -0.6 5,763,417 + +0.4 5,763,453 - +0.3 5,763,471 + -0.3 5,763,550 + BWI76_RS27780 0.12 +0.2 5,763,763 + BWI76_RS27780 0.59 -0.2 5,763,942 - +0.8 5,763,942 - -0.3 5,764,074 - -0.0 5,764,095 - +0.5 5,764,095 - -0.2 5,764,158 + +0.2 5,764,177 + +0.8 5,764,279 - -0.4 5,764,387 - BWI76_RS27785 0.16 -0.1 5,764,473 - BWI76_RS27785 0.22 +0.5 5,764,571 - BWI76_RS27785 0.29 +0.1 5,764,646 + BWI76_RS27785 0.35 +0.5 5,764,710 + BWI76_RS27785 0.39 -0.8 5,764,845 - BWI76_RS27785 0.49 +1.0 5,765,013 - BWI76_RS27785 0.61 -0.2 5,765,077 + BWI76_RS27785 0.66 +0.7 5,765,129 + BWI76_RS27785 0.70 +0.2 5,765,129 + BWI76_RS27785 0.70 +0.2 5,765,161 + BWI76_RS27785 0.72 +0.2 5,765,188 - BWI76_RS27785 0.74 +1.0 5,765,257 + BWI76_RS27785 0.79 +0.3 5,765,257 + BWI76_RS27785 0.79 +1.3 5,765,262 + BWI76_RS27785 0.79 +0.5 5,765,315 + BWI76_RS27785 0.83 -0.4 5,765,315 + BWI76_RS27785 0.83 +0.3 5,765,323 - +1.2 5,765,401 + BWI76_RS27785 0.89 +0.5 5,765,455 + -0.1 5,765,463 - +0.2 5,765,510 + +0.2 5,765,516 + +0.9 5,765,516 + +0.1 5,765,518 - +0.3 5,765,519 - +0.3 5,765,519 - -0.0 5,765,542 - -0.0 5,765,542 - +0.5 5,765,563 + +0.5 5,765,563 + +0.2 5,765,571 - +0.2 5,765,573 + +1.1 5,765,697 + +0.6 5,766,187 - BWI76_RS27790 0.37 +0.4 5,766,227 + BWI76_RS27790 0.40 +0.5 5,766,227 + BWI76_RS27790 0.40 +0.7 5,766,235 - BWI76_RS27790 0.41 +0.0 5,766,237 - BWI76_RS27790 0.41 +1.3 5,766,307 + BWI76_RS27790 0.46 -0.3 5,766,307 + BWI76_RS27790 0.46 -0.0 5,766,308 - BWI76_RS27790 0.46 -0.2 5,766,462 - BWI76_RS27790 0.58 +0.9 5,766,536 + BWI76_RS27790 0.63 +0.5 5,766,544 - BWI76_RS27790 0.64 -2.3 5,766,546 + BWI76_RS27790 0.64 -0.0
Or see this region's nucleotide sequence