Experiment: KLEB15 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24660 and BWI76_RS24665 are separated by 219 nucleotides BWI76_RS24665 and BWI76_RS24670 are separated by 37 nucleotides
BWI76_RS24660: BWI76_RS24660 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 5,139,026 to 5,140,513
_RS24660
BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704
_RS24665
BWI76_RS24670: BWI76_RS24670 - autoinducer-2 kinase, at 5,141,742 to 5,143,334
_RS24670
Position (kb) 5140
5141
5142 Strain fitness (log2 ratio) -1
0
1
2
3 at 5140.343 kb on + strand, within BWI76_RS24660 at 5140.415 kb on - strand at 5140.494 kb on + strand at 5140.502 kb on + strand at 5140.506 kb on + strand at 5140.591 kb on - strand at 5140.846 kb on + strand, within BWI76_RS24665 at 5140.846 kb on - strand, within BWI76_RS24665 at 5141.088 kb on + strand, within BWI76_RS24665 at 5141.126 kb on + strand, within BWI76_RS24665 at 5141.143 kb on + strand, within BWI76_RS24665 at 5141.438 kb on + strand, within BWI76_RS24665 at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.948 kb on - strand, within BWI76_RS24670 at 5142.253 kb on - strand, within BWI76_RS24670 at 5142.313 kb on - strand, within BWI76_RS24670 at 5142.335 kb on + strand, within BWI76_RS24670 at 5142.541 kb on + strand, within BWI76_RS24670
Per-strain Table
Position Strand Gene LocusTag Fraction KLEB15 MOI 1 remove 5,140,343 + BWI76_RS24660 0.89 +0.2 5,140,415 - -0.0 5,140,494 + +0.2 5,140,502 + -0.5 5,140,506 + -0.7 5,140,591 - -0.1 5,140,846 + BWI76_RS24665 0.12 +0.6 5,140,846 - BWI76_RS24665 0.12 +0.0 5,141,088 + BWI76_RS24665 0.37 -0.0 5,141,126 + BWI76_RS24665 0.40 +0.1 5,141,143 + BWI76_RS24665 0.42 -0.0 5,141,438 + BWI76_RS24665 0.73 +3.4 5,141,707 + -0.7 5,141,707 + +0.1 5,141,707 + +0.1 5,141,948 - BWI76_RS24670 0.13 +0.4 5,142,253 - BWI76_RS24670 0.32 +0.1 5,142,313 - BWI76_RS24670 0.36 -1.1 5,142,335 + BWI76_RS24670 0.37 +0.3 5,142,541 + BWI76_RS24670 0.50 -0.2
Or see this region's nucleotide sequence