Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19360

Experiment: KLEB15 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19355 and BWI76_RS19360 are separated by 256 nucleotidesBWI76_RS19360 and BWI76_RS19365 are separated by 30 nucleotides BWI76_RS19355: BWI76_RS19355 - LacI family transcriptional regulator, at 4,033,444 to 4,034,445 _RS19355 BWI76_RS19360: BWI76_RS19360 - glucose dehydrogenase, at 4,034,702 to 4,035,451 _RS19360 BWI76_RS19365: BWI76_RS19365 - ribulokinase, at 4,035,482 to 4,037,089 _RS19365 Position (kb) 4034 4035 4036Strain fitness (log2 ratio) -1 0 1at 4034.000 kb on + strand, within BWI76_RS19355at 4034.605 kb on + strandat 4034.780 kb on + strand, within BWI76_RS19360at 4035.032 kb on + strand, within BWI76_RS19360at 4035.175 kb on + strand, within BWI76_RS19360at 4035.175 kb on + strand, within BWI76_RS19360at 4035.425 kb on - strandat 4035.452 kb on - strandat 4035.550 kb on - strandat 4035.626 kb on + strandat 4036.078 kb on - strand, within BWI76_RS19365at 4036.213 kb on - strand, within BWI76_RS19365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 1
remove
4,034,000 + BWI76_RS19355 0.55 -0.1
4,034,605 + +0.2
4,034,780 + BWI76_RS19360 0.10 -0.2
4,035,032 + BWI76_RS19360 0.44 -1.7
4,035,175 + BWI76_RS19360 0.63 +0.1
4,035,175 + BWI76_RS19360 0.63 -1.2
4,035,425 - +0.2
4,035,452 - +0.2
4,035,550 - +0.2
4,035,626 + +0.0
4,036,078 - BWI76_RS19365 0.37 -0.2
4,036,213 - BWI76_RS19365 0.45 +0.6

Or see this region's nucleotide sequence