Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17655

Experiment: KLEB15 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17650 and BWI76_RS17655 are separated by 103 nucleotidesBWI76_RS17655 and BWI76_RS17660 are separated by 94 nucleotidesBWI76_RS17660 and BWI76_RS17665 overlap by 16 nucleotides BWI76_RS17650: BWI76_RS17650 - putative fatty acid desaturase, at 3,666,416 to 3,667,399 _RS17650 BWI76_RS17655: BWI76_RS17655 - MFS transporter, at 3,667,503 to 3,668,642 _RS17655 BWI76_RS17660: BWI76_RS17660 - AraC/XylS familytranscription regulator, at 3,668,737 to 3,669,504 _RS17660 BWI76_RS17665: BWI76_RS17665 - proteasome-type protease, at 3,669,489 to 3,670,241 _RS17665 Position (kb) 3667 3668 3669Strain fitness (log2 ratio) -2 -1 0 1at 3666.654 kb on - strand, within BWI76_RS17650at 3666.656 kb on + strand, within BWI76_RS17650at 3666.659 kb on - strand, within BWI76_RS17650at 3666.686 kb on + strand, within BWI76_RS17650at 3667.080 kb on + strand, within BWI76_RS17650at 3667.188 kb on + strand, within BWI76_RS17650at 3667.189 kb on + strand, within BWI76_RS17650at 3667.508 kb on - strandat 3668.127 kb on - strand, within BWI76_RS17655at 3668.136 kb on + strand, within BWI76_RS17655at 3668.221 kb on + strand, within BWI76_RS17655at 3668.281 kb on - strand, within BWI76_RS17655at 3668.469 kb on + strand, within BWI76_RS17655at 3668.671 kb on + strandat 3668.946 kb on - strandat 3669.018 kb on + strand, within BWI76_RS17660at 3669.057 kb on - strand, within BWI76_RS17660

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Per-strain Table

Position Strand Gene LocusTag Fraction KLEB15 MOI 1
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3,666,654 - BWI76_RS17650 0.24 -0.2
3,666,656 + BWI76_RS17650 0.24 -0.4
3,666,659 - BWI76_RS17650 0.25 -0.1
3,666,686 + BWI76_RS17650 0.27 +0.1
3,667,080 + BWI76_RS17650 0.67 -0.1
3,667,188 + BWI76_RS17650 0.78 -0.3
3,667,189 + BWI76_RS17650 0.79 +0.5
3,667,508 - -2.2
3,668,127 - BWI76_RS17655 0.55 +0.8
3,668,136 + BWI76_RS17655 0.56 +0.6
3,668,221 + BWI76_RS17655 0.63 +0.8
3,668,281 - BWI76_RS17655 0.68 +0.3
3,668,469 + BWI76_RS17655 0.85 +0.2
3,668,671 + +0.2
3,668,946 - +0.4
3,669,018 + BWI76_RS17660 0.37 +0.4
3,669,057 - BWI76_RS17660 0.42 +0.4

Or see this region's nucleotide sequence