Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15135

Experiment: No phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15125 and BWI76_RS15130 overlap by 4 nucleotidesBWI76_RS15130 and BWI76_RS15135 are separated by 300 nucleotidesBWI76_RS15135 and BWI76_RS15140 are separated by 35 nucleotides BWI76_RS15125: BWI76_RS15125 - acetyltransferase, at 3,170,617 to 3,171,195 _RS15125 BWI76_RS15130: BWI76_RS15130 - hypothetical protein, at 3,171,192 to 3,171,638 _RS15130 BWI76_RS15135: BWI76_RS15135 - hypothetical protein, at 3,171,939 to 3,172,229 _RS15135 BWI76_RS15140: BWI76_RS15140 - CusA/CzcA family heavy metal efflux RND transporter, at 3,172,265 to 3,175,378 _RS15140 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -1 0 1at 3170.991 kb on + strand, within BWI76_RS15125at 3171.183 kb on - strandat 3171.359 kb on + strand, within BWI76_RS15130at 3171.413 kb on - strand, within BWI76_RS15130at 3171.745 kb on - strandat 3171.904 kb on - strandat 3172.060 kb on - strand, within BWI76_RS15135at 3172.090 kb on - strand, within BWI76_RS15135at 3172.159 kb on + strand, within BWI76_RS15135at 3172.167 kb on - strand, within BWI76_RS15135at 3172.346 kb on + strandat 3172.542 kb on - strandat 3172.695 kb on + strand, within BWI76_RS15140at 3172.703 kb on - strand, within BWI76_RS15140at 3172.801 kb on + strand, within BWI76_RS15140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
remove
3,170,991 + BWI76_RS15125 0.65 -0.2
3,171,183 - +0.5
3,171,359 + BWI76_RS15130 0.37 -0.4
3,171,413 - BWI76_RS15130 0.49 +0.3
3,171,745 - -0.4
3,171,904 - -0.0
3,172,060 - BWI76_RS15135 0.42 -0.3
3,172,090 - BWI76_RS15135 0.52 -1.1
3,172,159 + BWI76_RS15135 0.76 -0.5
3,172,167 - BWI76_RS15135 0.78 -0.1
3,172,346 + -0.7
3,172,542 - -0.1
3,172,695 + BWI76_RS15140 0.14 +0.1
3,172,703 - BWI76_RS15140 0.14 +0.1
3,172,801 + BWI76_RS15140 0.17 +0.5

Or see this region's nucleotide sequence