Experiment: K. M5a1 KLEB10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20920 and BWI76_RS20925 are separated by 229 nucleotides BWI76_RS20925 and BWI76_RS20930 are separated by 9 nucleotides BWI76_RS20930 and BWI76_RS20935 are separated by 28 nucleotides
BWI76_RS20920: BWI76_RS20920 - AI-2E family transporter, at 4,373,622 to 4,374,689
_RS20920
BWI76_RS20925: BWI76_RS20925 - peptidase M48, at 4,374,919 to 4,376,382
_RS20925
BWI76_RS20930: BWI76_RS20930 - arsenate reductase (glutaredoxin), at 4,376,392 to 4,376,751
_RS20930
BWI76_RS20935: BWI76_RS20935 - DnaA regulatory inactivator Hda, at 4,376,780 to 4,377,505
_RS20935
Position (kb) 4374
4375
4376
4377 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4373.969 kb on + strand, within BWI76_RS20920 at 4374.001 kb on - strand, within BWI76_RS20920 at 4374.109 kb on - strand, within BWI76_RS20920 at 4374.491 kb on - strand, within BWI76_RS20920 at 4374.509 kb on + strand, within BWI76_RS20920 at 4374.543 kb on + strand, within BWI76_RS20920 at 4374.872 kb on - strand at 4374.872 kb on - strand at 4374.945 kb on + strand at 4375.040 kb on + strand at 4375.175 kb on - strand, within BWI76_RS20925 at 4375.355 kb on - strand, within BWI76_RS20925 at 4375.658 kb on - strand, within BWI76_RS20925 at 4375.849 kb on + strand, within BWI76_RS20925 at 4375.860 kb on - strand, within BWI76_RS20925 at 4375.877 kb on - strand, within BWI76_RS20925 at 4376.118 kb on + strand, within BWI76_RS20925 at 4376.308 kb on - strand at 4376.437 kb on - strand, within BWI76_RS20930 at 4376.447 kb on + strand, within BWI76_RS20930 at 4376.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1 remove 4,373,969 + BWI76_RS20920 0.32 -0.1 4,374,001 - BWI76_RS20920 0.35 +0.2 4,374,109 - BWI76_RS20920 0.46 +0.2 4,374,491 - BWI76_RS20920 0.81 -0.9 4,374,509 + BWI76_RS20920 0.83 -1.5 4,374,543 + BWI76_RS20920 0.86 +0.2 4,374,872 - +0.1 4,374,872 - -2.5 4,374,945 + -0.7 4,375,040 + +0.9 4,375,175 - BWI76_RS20925 0.17 -0.5 4,375,355 - BWI76_RS20925 0.30 -3.4 4,375,658 - BWI76_RS20925 0.50 -0.8 4,375,849 + BWI76_RS20925 0.64 -0.5 4,375,860 - BWI76_RS20925 0.64 -0.8 4,375,877 - BWI76_RS20925 0.65 -0.6 4,376,118 + BWI76_RS20925 0.82 -1.0 4,376,308 - -0.4 4,376,437 - BWI76_RS20930 0.12 -0.8 4,376,447 + BWI76_RS20930 0.15 +1.4 4,376,761 + -1.4
Or see this region's nucleotide sequence