Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19995

Experiment: K. M5a1 KLEB10 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19990 and BWI76_RS19995 are separated by 13 nucleotidesBWI76_RS19995 and BWI76_RS20000 are separated by 204 nucleotides BWI76_RS19990: BWI76_RS19990 - L-rhamnonate dehydratase, at 4,187,960 to 4,189,165 _RS19990 BWI76_RS19995: BWI76_RS19995 - IclR family transcriptional regulator, at 4,189,179 to 4,189,961 _RS19995 BWI76_RS20000: BWI76_RS20000 - competence/damage-inducible protein A, at 4,190,166 to 4,191,362 _RS20000 Position (kb) 4189 4190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4188.325 kb on - strand, within BWI76_RS19990at 4188.347 kb on + strand, within BWI76_RS19990at 4188.490 kb on + strand, within BWI76_RS19990at 4188.834 kb on - strand, within BWI76_RS19990at 4189.018 kb on + strand, within BWI76_RS19990at 4189.302 kb on - strand, within BWI76_RS19995at 4189.375 kb on - strand, within BWI76_RS19995at 4189.976 kb on - strandat 4190.084 kb on + strandat 4190.092 kb on - strandat 4190.611 kb on - strand, within BWI76_RS20000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1
remove
4,188,325 - BWI76_RS19990 0.30 -0.1
4,188,347 + BWI76_RS19990 0.32 +0.1
4,188,490 + BWI76_RS19990 0.44 +0.9
4,188,834 - BWI76_RS19990 0.72 +0.3
4,189,018 + BWI76_RS19990 0.88 -3.6
4,189,302 - BWI76_RS19995 0.16 +2.1
4,189,375 - BWI76_RS19995 0.25 +0.0
4,189,976 - -1.1
4,190,084 + +1.4
4,190,092 - -0.4
4,190,611 - BWI76_RS20000 0.37 -0.3

Or see this region's nucleotide sequence