Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13895

Experiment: K. M5a1 KLEB10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13890 and BWI76_RS13895 overlap by 32 nucleotidesBWI76_RS13895 and BWI76_RS13900 are separated by 104 nucleotides BWI76_RS13890: BWI76_RS13890 - LysR family transcriptional regulator, at 2,897,647 to 2,898,552 _RS13890 BWI76_RS13895: BWI76_RS13895 - LysR family transcriptional regulator, at 2,898,521 to 2,899,426 _RS13895 BWI76_RS13900: BWI76_RS13900 - MFS transporter, at 2,899,531 to 2,900,694 _RS13900 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -2 -1 0 1at 2897.906 kb on + strand, within BWI76_RS13890at 2898.014 kb on - strand, within BWI76_RS13890at 2898.036 kb on + strand, within BWI76_RS13890at 2898.817 kb on - strand, within BWI76_RS13895at 2899.146 kb on - strand, within BWI76_RS13895at 2899.417 kb on - strandat 2899.493 kb on + strandat 2899.576 kb on + strandat 2899.742 kb on - strandat 2899.789 kb on - strand, within BWI76_RS13900at 2900.337 kb on + strand, within BWI76_RS13900

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1
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2,897,906 + BWI76_RS13890 0.29 -0.0
2,898,014 - BWI76_RS13890 0.41 -2.5
2,898,036 + BWI76_RS13890 0.43 +1.5
2,898,817 - BWI76_RS13895 0.33 -1.6
2,899,146 - BWI76_RS13895 0.69 -0.5
2,899,417 - -1.6
2,899,493 + +0.2
2,899,576 + -2.6
2,899,742 - -0.6
2,899,789 - BWI76_RS13900 0.22 -2.4
2,900,337 + BWI76_RS13900 0.69 -1.5

Or see this region's nucleotide sequence