Experiment: K. M5a1 KLEB10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09000 and BWI76_RS09005 are separated by 182 nucleotides BWI76_RS09005 and BWI76_RS09010 overlap by 4 nucleotides BWI76_RS09010 and BWI76_RS09015 are separated by 109 nucleotides
BWI76_RS09000: BWI76_RS09000 - hypothetical protein, at 1,896,911 to 1,897,036
_RS09000
BWI76_RS09005: BWI76_RS09005 - transcriptional regulator MntR, at 1,897,219 to 1,897,692
_RS09005
BWI76_RS09010: BWI76_RS09010 - anion transporter, at 1,897,689 to 1,898,795
_RS09010
BWI76_RS09015: BWI76_RS09015 - aldo/keto reductase, at 1,898,905 to 1,899,945
_RS09015
Position (kb)
1897
1898
1899 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1896.730 kb on + strand at 1897.074 kb on - strand at 1897.234 kb on + strand at 1897.858 kb on - strand, within BWI76_RS09010 at 1897.876 kb on + strand, within BWI76_RS09010 at 1898.002 kb on - strand, within BWI76_RS09010 at 1898.018 kb on - strand, within BWI76_RS09010 at 1898.140 kb on + strand, within BWI76_RS09010 at 1898.222 kb on - strand, within BWI76_RS09010 at 1898.227 kb on - strand, within BWI76_RS09010 at 1898.343 kb on - strand, within BWI76_RS09010 at 1898.771 kb on - strand at 1898.865 kb on - strand at 1898.865 kb on - strand at 1898.950 kb on - strand at 1899.119 kb on - strand, within BWI76_RS09015 at 1899.242 kb on + strand, within BWI76_RS09015 at 1899.754 kb on + strand, within BWI76_RS09015 at 1899.772 kb on - strand, within BWI76_RS09015
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1 remove 1,896,730 + +1.7 1,897,074 - -0.3 1,897,234 + -1.1 1,897,858 - BWI76_RS09010 0.15 +0.2 1,897,876 + BWI76_RS09010 0.17 -0.8 1,898,002 - BWI76_RS09010 0.28 -2.1 1,898,018 - BWI76_RS09010 0.30 -0.6 1,898,140 + BWI76_RS09010 0.41 -0.8 1,898,222 - BWI76_RS09010 0.48 -0.8 1,898,227 - BWI76_RS09010 0.49 -0.2 1,898,343 - BWI76_RS09010 0.59 -0.6 1,898,771 - -0.2 1,898,865 - +0.0 1,898,865 - -3.4 1,898,950 - +0.7 1,899,119 - BWI76_RS09015 0.21 -0.5 1,899,242 + BWI76_RS09015 0.32 +1.2 1,899,754 + BWI76_RS09015 0.82 -1.7 1,899,772 - BWI76_RS09015 0.83 -0.0
Or see this region's nucleotide sequence