Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08310

Experiment: K. M5a1 KLEB10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08305 and BWI76_RS08310 are separated by 1 nucleotidesBWI76_RS08310 and BWI76_RS08315 are separated by 10 nucleotides BWI76_RS08305: BWI76_RS08305 - two-component sensor histidine kinase, at 1,756,319 to 1,759,006 _RS08305 BWI76_RS08310: BWI76_RS08310 - potassium-transporting ATPase subunit C, at 1,759,008 to 1,759,583 _RS08310 BWI76_RS08315: BWI76_RS08315 - K+-transporting ATPase subunit B, at 1,759,594 to 1,761,642 _RS08315 Position (kb) 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1at 1758.017 kb on + strand, within BWI76_RS08305at 1758.042 kb on - strand, within BWI76_RS08305at 1758.614 kb on - strand, within BWI76_RS08305at 1758.665 kb on + strand, within BWI76_RS08305at 1758.769 kb on + strandat 1759.041 kb on - strandat 1759.200 kb on - strand, within BWI76_RS08310at 1759.426 kb on - strand, within BWI76_RS08310at 1759.606 kb on + strandat 1759.952 kb on - strand, within BWI76_RS08315

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1
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1,758,017 + BWI76_RS08305 0.63 +0.1
1,758,042 - BWI76_RS08305 0.64 -0.4
1,758,614 - BWI76_RS08305 0.85 +0.8
1,758,665 + BWI76_RS08305 0.87 -1.0
1,758,769 + +0.1
1,759,041 - +0.7
1,759,200 - BWI76_RS08310 0.33 -0.5
1,759,426 - BWI76_RS08310 0.73 -3.1
1,759,606 + -1.4
1,759,952 - BWI76_RS08315 0.17 +1.1

Or see this region's nucleotide sequence