Experiment: K. M5a1 KLEB10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07535 and BWI76_RS07540 overlap by 11 nucleotides BWI76_RS07540 and BWI76_RS07545 are separated by 17 nucleotides
BWI76_RS07535: BWI76_RS07535 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 1,594,703 to 1,595,746
_RS07535
BWI76_RS07540: BWI76_RS07540 - dipeptide ABC transporter ATP-binding protein DppD, at 1,595,736 to 1,596,746
_RS07540
BWI76_RS07545: BWI76_RS07545 - amidase, at 1,596,764 to 1,597,948
_RS07545
Position (kb)
1595
1596
1597 Strain fitness (log2 ratio)
-1
0
1
2 at 1594.808 kb on + strand, within BWI76_RS07535 at 1594.828 kb on + strand, within BWI76_RS07535 at 1594.964 kb on - strand, within BWI76_RS07535 at 1595.181 kb on - strand, within BWI76_RS07535 at 1595.470 kb on + strand, within BWI76_RS07535 at 1595.554 kb on + strand, within BWI76_RS07535 at 1595.608 kb on + strand, within BWI76_RS07535 at 1595.608 kb on + strand, within BWI76_RS07535 at 1595.783 kb on - strand at 1595.824 kb on + strand at 1595.892 kb on - strand, within BWI76_RS07540 at 1596.345 kb on + strand, within BWI76_RS07540 at 1596.422 kb on + strand, within BWI76_RS07540 at 1596.548 kb on + strand, within BWI76_RS07540 at 1596.627 kb on + strand, within BWI76_RS07540 at 1597.190 kb on + strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.449 kb on + strand, within BWI76_RS07545 at 1597.720 kb on - strand, within BWI76_RS07545
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1 remove 1,594,808 + BWI76_RS07535 0.10 +0.1 1,594,828 + BWI76_RS07535 0.12 -0.2 1,594,964 - BWI76_RS07535 0.25 -0.1 1,595,181 - BWI76_RS07535 0.46 +1.8 1,595,470 + BWI76_RS07535 0.73 +0.5 1,595,554 + BWI76_RS07535 0.82 -0.1 1,595,608 + BWI76_RS07535 0.87 -0.2 1,595,608 + BWI76_RS07535 0.87 +0.2 1,595,783 - -0.1 1,595,824 + +0.3 1,595,892 - BWI76_RS07540 0.15 +0.8 1,596,345 + BWI76_RS07540 0.60 +0.4 1,596,422 + BWI76_RS07540 0.68 +1.2 1,596,548 + BWI76_RS07540 0.80 +1.2 1,596,627 + BWI76_RS07540 0.88 +1.8 1,597,190 + BWI76_RS07545 0.36 -0.6 1,597,345 - BWI76_RS07545 0.49 +0.6 1,597,345 - BWI76_RS07545 0.49 -0.7 1,597,449 + BWI76_RS07545 0.58 +0.0 1,597,720 - BWI76_RS07545 0.81 -0.2
Or see this region's nucleotide sequence