Experiment: K. M5a1 KLEB10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22395 and BWI76_RS22400 are separated by 174 nucleotides BWI76_RS22400 and BWI76_RS22405 are separated by 9 nucleotides BWI76_RS22405 and BWI76_RS22410 are separated by 23 nucleotides BWI76_RS22410 and BWI76_RS22415 are separated by 207 nucleotides
BWI76_RS22395: BWI76_RS22395 - hypothetical protein, at 4,670,410 to 4,671,681
_RS22395
BWI76_RS22400: BWI76_RS22400 - PTS sugar transporter subunit IIB, at 4,671,856 to 4,672,170
_RS22400
BWI76_RS22405: BWI76_RS22405 - PTS cellobiose transporter subunit IIC, at 4,672,180 to 4,673,502
_RS22405
BWI76_RS22410: BWI76_RS22410 - PTS lactose/cellobiose transporter subunit IIA, at 4,673,526 to 4,673,840
_RS22410
BWI76_RS22415: BWI76_RS22415 - transcriptional regulator, at 4,674,048 to 4,674,962
_RS22415
Position (kb)
4672
4673
4674 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4671.287 kb on - strand, within BWI76_RS22395 at 4671.347 kb on + strand, within BWI76_RS22395 at 4671.412 kb on - strand, within BWI76_RS22395 at 4671.755 kb on - strand at 4671.868 kb on + strand at 4672.077 kb on - strand, within BWI76_RS22400 at 4672.184 kb on - strand at 4672.198 kb on + strand at 4672.294 kb on + strand at 4672.308 kb on - strand at 4672.422 kb on - strand, within BWI76_RS22405 at 4672.614 kb on - strand, within BWI76_RS22405 at 4673.031 kb on - strand, within BWI76_RS22405 at 4673.243 kb on + strand, within BWI76_RS22405 at 4673.258 kb on + strand, within BWI76_RS22405 at 4673.374 kb on + strand at 4673.511 kb on + strand at 4673.603 kb on - strand, within BWI76_RS22410 at 4673.605 kb on + strand, within BWI76_RS22410 at 4673.613 kb on - strand, within BWI76_RS22410 at 4673.778 kb on - strand, within BWI76_RS22410 at 4673.851 kb on + strand at 4673.938 kb on + strand at 4674.152 kb on - strand, within BWI76_RS22415 at 4674.162 kb on - strand at 4674.188 kb on + strand, within BWI76_RS22415 at 4674.196 kb on - strand, within BWI76_RS22415 at 4674.242 kb on + strand, within BWI76_RS22415 at 4674.381 kb on - strand, within BWI76_RS22415
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1 remove 4,671,287 - BWI76_RS22395 0.69 -1.4 4,671,347 + BWI76_RS22395 0.74 +0.5 4,671,412 - BWI76_RS22395 0.79 +0.1 4,671,755 - -0.5 4,671,868 + +0.6 4,672,077 - BWI76_RS22400 0.70 +1.8 4,672,184 - +0.0 4,672,198 + -0.2 4,672,294 + +1.0 4,672,308 - +1.3 4,672,422 - BWI76_RS22405 0.18 -1.3 4,672,614 - BWI76_RS22405 0.33 +0.3 4,673,031 - BWI76_RS22405 0.64 -0.5 4,673,243 + BWI76_RS22405 0.80 -2.3 4,673,258 + BWI76_RS22405 0.81 -0.2 4,673,374 + +0.4 4,673,511 + -0.1 4,673,603 - BWI76_RS22410 0.24 -0.0 4,673,605 + BWI76_RS22410 0.25 -0.1 4,673,613 - BWI76_RS22410 0.28 -0.1 4,673,778 - BWI76_RS22410 0.80 -0.2 4,673,851 + -1.0 4,673,938 + -0.1 4,674,152 - BWI76_RS22415 0.11 +0.1 4,674,162 - -0.8 4,674,188 + BWI76_RS22415 0.15 -0.6 4,674,196 - BWI76_RS22415 0.16 +0.1 4,674,242 + BWI76_RS22415 0.21 -0.1 4,674,381 - BWI76_RS22415 0.36 +0.4
Or see this region's nucleotide sequence