Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22390

Experiment: K. M5a1 KLEB10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22385 and BWI76_RS22390 are separated by 12 nucleotidesBWI76_RS22390 and BWI76_RS22395 are separated by 223 nucleotides BWI76_RS22385: BWI76_RS22385 - beta-1,4 mannanase, at 4,666,635 to 4,668,830 _RS22385 BWI76_RS22390: BWI76_RS22390 - maltoporin, at 4,668,843 to 4,670,186 _RS22390 BWI76_RS22395: BWI76_RS22395 - hypothetical protein, at 4,670,410 to 4,671,681 _RS22395 Position (kb) 4668 4669 4670 4671Strain fitness (log2 ratio) -2 -1 0 1at 4667.950 kb on + strand, within BWI76_RS22385at 4668.212 kb on - strand, within BWI76_RS22385at 4668.212 kb on - strand, within BWI76_RS22385at 4668.241 kb on - strand, within BWI76_RS22385at 4668.241 kb on - strand, within BWI76_RS22385at 4668.545 kb on - strand, within BWI76_RS22385at 4668.667 kb on - strandat 4668.692 kb on - strandat 4669.043 kb on - strand, within BWI76_RS22390at 4669.323 kb on + strand, within BWI76_RS22390at 4669.331 kb on - strand, within BWI76_RS22390at 4669.340 kb on + strand, within BWI76_RS22390at 4669.341 kb on - strand, within BWI76_RS22390at 4669.540 kb on - strand, within BWI76_RS22390at 4669.546 kb on - strand, within BWI76_RS22390at 4669.587 kb on + strand, within BWI76_RS22390at 4669.751 kb on + strand, within BWI76_RS22390at 4669.756 kb on - strand, within BWI76_RS22390at 4670.017 kb on + strand, within BWI76_RS22390at 4670.079 kb on + strandat 4670.343 kb on + strandat 4670.409 kb on - strandat 4670.755 kb on - strand, within BWI76_RS22395at 4670.760 kb on + strand, within BWI76_RS22395at 4670.765 kb on + strand, within BWI76_RS22395at 4671.060 kb on - strand, within BWI76_RS22395

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1
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4,667,950 + BWI76_RS22385 0.60 +0.4
4,668,212 - BWI76_RS22385 0.72 -0.4
4,668,212 - BWI76_RS22385 0.72 +0.6
4,668,241 - BWI76_RS22385 0.73 -0.2
4,668,241 - BWI76_RS22385 0.73 +0.4
4,668,545 - BWI76_RS22385 0.87 +0.1
4,668,667 - +0.4
4,668,692 - -0.1
4,669,043 - BWI76_RS22390 0.15 -0.1
4,669,323 + BWI76_RS22390 0.36 +0.6
4,669,331 - BWI76_RS22390 0.36 -0.1
4,669,340 + BWI76_RS22390 0.37 -2.2
4,669,341 - BWI76_RS22390 0.37 +0.3
4,669,540 - BWI76_RS22390 0.52 +1.3
4,669,546 - BWI76_RS22390 0.52 -0.7
4,669,587 + BWI76_RS22390 0.55 +1.2
4,669,751 + BWI76_RS22390 0.68 +0.3
4,669,756 - BWI76_RS22390 0.68 -0.4
4,670,017 + BWI76_RS22390 0.87 -0.3
4,670,079 + +0.4
4,670,343 + +0.0
4,670,409 - -0.0
4,670,755 - BWI76_RS22395 0.27 -1.3
4,670,760 + BWI76_RS22395 0.28 -0.8
4,670,765 + BWI76_RS22395 0.28 -0.0
4,671,060 - BWI76_RS22395 0.51 -0.3

Or see this region's nucleotide sequence