Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17285

Experiment: K. M5a1 KLEB10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17280 and BWI76_RS17285 are separated by 112 nucleotidesBWI76_RS17285 and BWI76_RS17290 are separated by 42 nucleotides BWI76_RS17280: BWI76_RS17280 - patatin family protein, at 3,580,947 to 3,581,846 _RS17280 BWI76_RS17285: BWI76_RS17285 - hypothetical protein, at 3,581,959 to 3,582,417 _RS17285 BWI76_RS17290: BWI76_RS17290 - formyltetrahydrofolate deformylase, at 3,582,460 to 3,583,302 _RS17290 Position (kb) 3581 3582 3583Strain fitness (log2 ratio) -3 -2 -1 0 1at 3580.977 kb on - strandat 3581.020 kb on + strandat 3581.114 kb on - strand, within BWI76_RS17280at 3581.423 kb on + strand, within BWI76_RS17280at 3581.423 kb on + strand, within BWI76_RS17280at 3581.581 kb on - strand, within BWI76_RS17280at 3581.997 kb on - strandat 3582.047 kb on + strand, within BWI76_RS17285at 3582.105 kb on + strand, within BWI76_RS17285at 3582.151 kb on + strand, within BWI76_RS17285at 3582.182 kb on + strand, within BWI76_RS17285at 3582.221 kb on + strand, within BWI76_RS17285at 3582.270 kb on - strand, within BWI76_RS17285at 3582.321 kb on + strand, within BWI76_RS17285at 3582.321 kb on + strand, within BWI76_RS17285at 3582.482 kb on - strandat 3582.500 kb on - strandat 3582.663 kb on - strand, within BWI76_RS17290at 3582.663 kb on - strandat 3582.706 kb on - strand, within BWI76_RS17290at 3582.763 kb on - strand, within BWI76_RS17290at 3583.036 kb on - strand, within BWI76_RS17290at 3583.176 kb on + strand, within BWI76_RS17290

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1
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3,580,977 - -0.5
3,581,020 + +0.3
3,581,114 - BWI76_RS17280 0.19 -0.5
3,581,423 + BWI76_RS17280 0.53 -0.4
3,581,423 + BWI76_RS17280 0.53 +0.7
3,581,581 - BWI76_RS17280 0.70 +0.3
3,581,997 - -0.3
3,582,047 + BWI76_RS17285 0.19 -1.4
3,582,105 + BWI76_RS17285 0.32 -0.9
3,582,151 + BWI76_RS17285 0.42 -1.4
3,582,182 + BWI76_RS17285 0.49 -0.3
3,582,221 + BWI76_RS17285 0.57 -0.7
3,582,270 - BWI76_RS17285 0.68 -0.1
3,582,321 + BWI76_RS17285 0.79 +0.7
3,582,321 + BWI76_RS17285 0.79 -1.0
3,582,482 - +0.2
3,582,500 - -0.6
3,582,663 - BWI76_RS17290 0.24 +0.5
3,582,663 - +0.7
3,582,706 - BWI76_RS17290 0.29 +1.0
3,582,763 - BWI76_RS17290 0.36 -0.3
3,583,036 - BWI76_RS17290 0.68 -3.1
3,583,176 + BWI76_RS17290 0.85 +0.0

Or see this region's nucleotide sequence