Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17180

Experiment: K. M5a1 KLEB10 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17175 and BWI76_RS17180 are separated by 92 nucleotidesBWI76_RS17180 and BWI76_RS17185 are separated by 106 nucleotidesBWI76_RS17185 and BWI76_RS17190 are separated by 19 nucleotides BWI76_RS17175: BWI76_RS17175 - 6-phosphofructokinase II, at 3,560,009 to 3,560,941 _RS17175 BWI76_RS17180: BWI76_RS17180 - hypothetical protein, at 3,561,034 to 3,561,318 _RS17180 BWI76_RS17185: BWI76_RS17185 - fructosamine kinase family protein, at 3,561,425 to 3,562,297 _RS17185 BWI76_RS17190: BWI76_RS17190 - TonB system transport protein TonB, at 3,562,317 to 3,563,054 _RS17190 Position (kb) 3561 3562Strain fitness (log2 ratio) -1 0 1at 3560.039 kb on - strandat 3560.041 kb on + strandat 3560.140 kb on + strand, within BWI76_RS17175at 3560.934 kb on + strandat 3561.067 kb on + strand, within BWI76_RS17180at 3561.144 kb on - strand, within BWI76_RS17180at 3561.261 kb on + strand, within BWI76_RS17180at 3561.767 kb on + strand, within BWI76_RS17185at 3562.198 kb on + strand, within BWI76_RS17185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB10 MOI 1
remove
3,560,039 - -1.4
3,560,041 + +0.0
3,560,140 + BWI76_RS17175 0.14 +0.2
3,560,934 + -1.2
3,561,067 + BWI76_RS17180 0.12 -0.9
3,561,144 - BWI76_RS17180 0.39 +0.0
3,561,261 + BWI76_RS17180 0.80 -1.1
3,561,767 + BWI76_RS17185 0.39 -0.1
3,562,198 + BWI76_RS17185 0.89 -0.3

Or see this region's nucleotide sequence