Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26830

Experiment: K. M5a1 KLEB22 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26810 and BWI76_RS26815 are separated by 83 nucleotidesBWI76_RS26815 and BWI76_RS26820 are separated by 351 nucleotidesBWI76_RS26820 and BWI76_RS26825 overlap by 20 nucleotidesBWI76_RS26825 and BWI76_RS26830 are separated by 48 nucleotidesBWI76_RS26830 and BWI76_RS26835 are separated by 11 nucleotidesBWI76_RS26835 and BWI76_RS26840 are separated by 2 nucleotides BWI76_RS26810: BWI76_RS26810 - cellulose biosynthesis protein BcsG, at 5,558,766 to 5,560,442 _RS26810 BWI76_RS26815: BWI76_RS26815 - small toxic polypeptide ldrD (Modular protein), at 5,560,526 to 5,560,651 _RS26815 BWI76_RS26820: BWI76_RS26820 - small toxic polypeptide ldrD (Modular protein), at 5,561,003 to 5,561,128 _RS26820 BWI76_RS26825: BWI76_RS26825 - hypothetical protein, at 5,561,109 to 5,561,327 _RS26825 BWI76_RS26830: BWI76_RS26830 - endoglucanase, at 5,561,376 to 5,562,380 _RS26830 BWI76_RS26835: BWI76_RS26835 - hypothetical protein, at 5,562,392 to 5,562,865 _RS26835 BWI76_RS26840: BWI76_RS26840 - cellulose synthase, at 5,562,868 to 5,566,920 _RS26840 Position (kb) 5561 5562 5563Strain fitness (log2 ratio) -2 -1 0 1at 5560.399 kb on + strandat 5560.492 kb on - strandat 5560.729 kb on - strandat 5560.964 kb on - strandat 5561.144 kb on + strand, within BWI76_RS26825at 5561.342 kb on + strandat 5561.398 kb on + strandat 5561.477 kb on + strand, within BWI76_RS26830at 5561.477 kb on + strand, within BWI76_RS26830at 5561.544 kb on - strand, within BWI76_RS26830at 5561.772 kb on + strand, within BWI76_RS26830at 5561.829 kb on + strand, within BWI76_RS26830at 5561.860 kb on + strand, within BWI76_RS26830at 5561.868 kb on - strand, within BWI76_RS26830at 5561.876 kb on - strand, within BWI76_RS26830at 5562.152 kb on + strand, within BWI76_RS26830at 5562.160 kb on - strand, within BWI76_RS26830at 5562.324 kb on - strandat 5562.454 kb on - strand, within BWI76_RS26835at 5562.471 kb on + strand, within BWI76_RS26835at 5562.478 kb on - strand, within BWI76_RS26835at 5562.484 kb on - strand, within BWI76_RS26835at 5562.523 kb on + strand, within BWI76_RS26835at 5562.604 kb on + strand, within BWI76_RS26835at 5562.612 kb on - strand, within BWI76_RS26835at 5562.612 kb on - strand, within BWI76_RS26835at 5562.622 kb on - strand, within BWI76_RS26835at 5562.657 kb on + strand, within BWI76_RS26835at 5562.665 kb on - strand, within BWI76_RS26835at 5562.969 kb on - strandat 5562.975 kb on - strandat 5563.055 kb on + strandat 5563.057 kb on + strandat 5563.119 kb on + strandat 5563.123 kb on - strandat 5563.142 kb on - strandat 5563.219 kb on + strandat 5563.355 kb on - strand, within BWI76_RS26840

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 0.1
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5,560,399 + -0.9
5,560,492 - +0.1
5,560,729 - -0.1
5,560,964 - +0.7
5,561,144 + BWI76_RS26825 0.16 +0.5
5,561,342 + +0.1
5,561,398 + +0.1
5,561,477 + BWI76_RS26830 0.10 -0.7
5,561,477 + BWI76_RS26830 0.10 -1.2
5,561,544 - BWI76_RS26830 0.17 -0.5
5,561,772 + BWI76_RS26830 0.39 -0.6
5,561,829 + BWI76_RS26830 0.45 +0.3
5,561,860 + BWI76_RS26830 0.48 -0.7
5,561,868 - BWI76_RS26830 0.49 +0.3
5,561,876 - BWI76_RS26830 0.50 -0.3
5,562,152 + BWI76_RS26830 0.77 -0.5
5,562,160 - BWI76_RS26830 0.78 -0.6
5,562,324 - -0.2
5,562,454 - BWI76_RS26835 0.13 +1.0
5,562,471 + BWI76_RS26835 0.17 +0.3
5,562,478 - BWI76_RS26835 0.18 +0.3
5,562,484 - BWI76_RS26835 0.19 +0.1
5,562,523 + BWI76_RS26835 0.28 -0.2
5,562,604 + BWI76_RS26835 0.45 +0.4
5,562,612 - BWI76_RS26835 0.46 -0.5
5,562,612 - BWI76_RS26835 0.46 +0.2
5,562,622 - BWI76_RS26835 0.49 +0.2
5,562,657 + BWI76_RS26835 0.56 -2.0
5,562,665 - BWI76_RS26835 0.58 -0.7
5,562,969 - +0.2
5,562,975 - -0.6
5,563,055 + -0.8
5,563,057 + +0.2
5,563,119 + +0.4
5,563,123 - +0.1
5,563,142 - -0.7
5,563,219 + +0.0
5,563,355 - BWI76_RS26840 0.12 +0.1

Or see this region's nucleotide sequence