Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06810

Experiment: K. M5a1 KLEB22 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS06795 and BWI76_RS06800 are separated by 66 nucleotidesBWI76_RS06800 and BWI76_RS06805 are separated by 14 nucleotidesBWI76_RS06805 and BWI76_RS06810 are separated by 69 nucleotidesBWI76_RS06810 and BWI76_RS06815 are separated by 150 nucleotidesBWI76_RS06815 and BWI76_RS06820 are separated by 91 nucleotides BWI76_RS06795: BWI76_RS06795 - hypothetical protein, at 1,427,507 to 1,428,067 _RS06795 BWI76_RS06800: BWI76_RS06800 - DUF2496 domain-containing protein, at 1,428,134 to 1,428,307 _RS06800 BWI76_RS06805: BWI76_RS06805 - primosomal replication protein N'', at 1,428,322 to 1,428,849 _RS06805 BWI76_RS06810: BWI76_RS06810 - hypothetical protein, at 1,428,919 to 1,429,296 _RS06810 BWI76_RS06815: BWI76_RS06815 - adenine phosphoribosyltransferase, at 1,429,447 to 1,429,998 _RS06815 BWI76_RS06820: BWI76_RS06820 - DNA polymerase III subunit gamma/tau, at 1,430,090 to 1,431,991 _RS06820 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -2 -1 0 1at 1428.046 kb on + strandat 1428.274 kb on + strand, within BWI76_RS06800at 1428.450 kb on - strand, within BWI76_RS06805at 1428.556 kb on - strand, within BWI76_RS06805at 1428.707 kb on + strand, within BWI76_RS06805at 1428.879 kb on + strandat 1428.974 kb on - strand, within BWI76_RS06810at 1429.029 kb on + strand, within BWI76_RS06810at 1429.141 kb on - strand, within BWI76_RS06810at 1429.250 kb on - strand, within BWI76_RS06810at 1429.290 kb on + strandat 1429.367 kb on - strandat 1429.498 kb on + strandat 1429.498 kb on + strandat 1429.506 kb on - strand, within BWI76_RS06815at 1429.585 kb on - strand, within BWI76_RS06815at 1429.696 kb on - strand, within BWI76_RS06815at 1429.891 kb on + strand, within BWI76_RS06815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 0.1
remove
1,428,046 + +0.7
1,428,274 + BWI76_RS06800 0.80 +0.2
1,428,450 - BWI76_RS06805 0.24 -0.1
1,428,556 - BWI76_RS06805 0.44 +0.1
1,428,707 + BWI76_RS06805 0.73 -0.5
1,428,879 + -0.4
1,428,974 - BWI76_RS06810 0.15 -0.6
1,429,029 + BWI76_RS06810 0.29 -2.1
1,429,141 - BWI76_RS06810 0.59 -0.5
1,429,250 - BWI76_RS06810 0.88 -0.1
1,429,290 + +0.5
1,429,367 - -1.7
1,429,498 + +1.3
1,429,498 + +0.1
1,429,506 - BWI76_RS06815 0.11 +0.6
1,429,585 - BWI76_RS06815 0.25 -0.0
1,429,696 - BWI76_RS06815 0.45 -0.1
1,429,891 + BWI76_RS06815 0.80 +0.8

Or see this region's nucleotide sequence