Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04440

Experiment: K. M5a1 KLEB22 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04435 and BWI76_RS04440 are separated by 31 nucleotidesBWI76_RS04440 and BWI76_RS04445 overlap by 4 nucleotidesBWI76_RS04445 and BWI76_RS04450 are separated by 10 nucleotides BWI76_RS04435: BWI76_RS04435 - [citrate (pro-3S)-lyase] ligase, at 916,335 to 917,363 _RS04435 BWI76_RS04440: BWI76_RS04440 - citrate lyase ACP, at 917,395 to 917,688 _RS04440 BWI76_RS04445: BWI76_RS04445 - citrate (pro-3S)-lyase subunit beta, at 917,685 to 918,554 _RS04445 BWI76_RS04450: BWI76_RS04450 - citrate lyase subunit alpha, at 918,565 to 920,091 _RS04450 Position (kb) 917 918Strain fitness (log2 ratio) -3 -2 -1 0 1at 916.397 kb on + strandat 916.398 kb on - strandat 916.418 kb on + strandat 916.418 kb on + strandat 916.426 kb on - strandat 916.438 kb on + strand, within BWI76_RS04435at 916.461 kb on + strand, within BWI76_RS04435at 916.503 kb on + strand, within BWI76_RS04435at 916.503 kb on + strand, within BWI76_RS04435at 916.526 kb on - strand, within BWI76_RS04435at 916.552 kb on + strand, within BWI76_RS04435at 916.552 kb on + strand, within BWI76_RS04435at 916.560 kb on - strand, within BWI76_RS04435at 916.560 kb on - strand, within BWI76_RS04435at 916.565 kb on + strand, within BWI76_RS04435at 916.571 kb on + strand, within BWI76_RS04435at 916.585 kb on + strand, within BWI76_RS04435at 916.830 kb on - strand, within BWI76_RS04435at 917.148 kb on - strand, within BWI76_RS04435at 917.237 kb on + strand, within BWI76_RS04435at 917.418 kb on + strandat 917.461 kb on - strand, within BWI76_RS04440at 917.559 kb on + strand, within BWI76_RS04440at 917.615 kb on - strand, within BWI76_RS04440at 917.653 kb on + strand, within BWI76_RS04440at 917.759 kb on - strandat 917.935 kb on + strand, within BWI76_RS04445at 918.031 kb on + strand, within BWI76_RS04445at 918.031 kb on + strand, within BWI76_RS04445at 918.046 kb on + strand, within BWI76_RS04445at 918.379 kb on - strand, within BWI76_RS04445at 918.454 kb on + strand, within BWI76_RS04445at 918.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 0.1
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916,397 + +0.8
916,398 - -2.9
916,418 + -2.0
916,418 + -0.5
916,426 - +0.1
916,438 + BWI76_RS04435 0.10 +0.0
916,461 + BWI76_RS04435 0.12 -0.4
916,503 + BWI76_RS04435 0.16 +0.1
916,503 + BWI76_RS04435 0.16 +0.0
916,526 - BWI76_RS04435 0.19 +0.9
916,552 + BWI76_RS04435 0.21 -0.3
916,552 + BWI76_RS04435 0.21 -0.1
916,560 - BWI76_RS04435 0.22 +0.2
916,560 - BWI76_RS04435 0.22 +0.7
916,565 + BWI76_RS04435 0.22 +0.9
916,571 + BWI76_RS04435 0.23 -0.8
916,585 + BWI76_RS04435 0.24 +0.1
916,830 - BWI76_RS04435 0.48 -0.4
917,148 - BWI76_RS04435 0.79 -0.2
917,237 + BWI76_RS04435 0.88 -0.2
917,418 + -0.0
917,461 - BWI76_RS04440 0.22 -0.2
917,559 + BWI76_RS04440 0.56 -0.3
917,615 - BWI76_RS04440 0.75 -0.6
917,653 + BWI76_RS04440 0.88 -1.2
917,759 - -0.3
917,935 + BWI76_RS04445 0.29 -1.0
918,031 + BWI76_RS04445 0.40 -0.5
918,031 + BWI76_RS04445 0.40 +0.1
918,046 + BWI76_RS04445 0.41 +0.6
918,379 - BWI76_RS04445 0.80 +0.1
918,454 + BWI76_RS04445 0.88 -0.2
918,527 - -1.1

Or see this region's nucleotide sequence