Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19500

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19490 and BWI76_RS19495 overlap by 17 nucleotidesBWI76_RS19495 and BWI76_RS19500 overlap by 8 nucleotidesBWI76_RS19500 and BWI76_RS19505 are separated by 7 nucleotides BWI76_RS19490: BWI76_RS19490 - binding-protein-dependent transport system inner membrane protein, at 4,072,362 to 4,073,099 _RS19490 BWI76_RS19495: BWI76_RS19495 - ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein, at 4,073,083 to 4,074,030 _RS19495 BWI76_RS19500: BWI76_RS19500 - osmoprotectant uptake system permease, at 4,074,023 to 4,075,180 _RS19500 BWI76_RS19505: BWI76_RS19505 - ABC transporter substrate-binding protein, at 4,075,188 to 4,076,105 _RS19505 Position (kb) 4074 4075 4076Strain fitness (log2 ratio) -1 0 1at 4073.756 kb on + strand, within BWI76_RS19495at 4074.047 kb on - strandat 4074.077 kb on + strandat 4074.190 kb on - strand, within BWI76_RS19500at 4074.236 kb on + strand, within BWI76_RS19500at 4074.257 kb on + strand, within BWI76_RS19500at 4074.351 kb on - strand, within BWI76_RS19500at 4074.369 kb on - strand, within BWI76_RS19500at 4074.406 kb on + strandat 4074.869 kb on + strand, within BWI76_RS19500at 4074.892 kb on - strand, within BWI76_RS19500at 4074.897 kb on - strand, within BWI76_RS19500at 4075.369 kb on - strand, within BWI76_RS19505at 4075.594 kb on - strand, within BWI76_RS19505at 4075.622 kb on + strand, within BWI76_RS19505at 4075.714 kb on + strand, within BWI76_RS19505at 4075.907 kb on + strand, within BWI76_RS19505at 4075.915 kb on - strand, within BWI76_RS19505at 4075.957 kb on - strand, within BWI76_RS19505

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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4,073,756 + BWI76_RS19495 0.71 -0.6
4,074,047 - -0.0
4,074,077 + +1.4
4,074,190 - BWI76_RS19500 0.14 -0.8
4,074,236 + BWI76_RS19500 0.18 -0.6
4,074,257 + BWI76_RS19500 0.20 -1.5
4,074,351 - BWI76_RS19500 0.28 -1.6
4,074,369 - BWI76_RS19500 0.30 -0.4
4,074,406 + -0.3
4,074,869 + BWI76_RS19500 0.73 -0.7
4,074,892 - BWI76_RS19500 0.75 -0.5
4,074,897 - BWI76_RS19500 0.75 -0.1
4,075,369 - BWI76_RS19505 0.20 +1.6
4,075,594 - BWI76_RS19505 0.44 +0.5
4,075,622 + BWI76_RS19505 0.47 -1.0
4,075,714 + BWI76_RS19505 0.57 -0.6
4,075,907 + BWI76_RS19505 0.78 -0.9
4,075,915 - BWI76_RS19505 0.79 -0.0
4,075,957 - BWI76_RS19505 0.84 -0.2

Or see this region's nucleotide sequence