Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19190

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19185 and BWI76_RS19190 overlap by 1 nucleotidesBWI76_RS19190 and BWI76_RS19195 overlap by 4 nucleotidesBWI76_RS19195 and BWI76_RS19200 overlap by 4 nucleotides BWI76_RS19185: BWI76_RS19185 - ABC transporter ATP-binding protein, at 3,993,449 to 3,994,483 _RS19185 BWI76_RS19190: BWI76_RS19190 - oligopeptide/dipeptide ABC transporter ATPase, at 3,994,483 to 3,995,463 _RS19190 BWI76_RS19195: BWI76_RS19195 - nickel ABC transporter permease, at 3,995,460 to 3,996,306 _RS19195 BWI76_RS19200: BWI76_RS19200 - binding-protein-dependent transport system inner membrane protein, at 3,996,303 to 3,997,241 _RS19200 Position (kb) 3994 3995 3996Strain fitness (log2 ratio) -1 0 1 2at 3993.597 kb on + strand, within BWI76_RS19185at 3993.731 kb on - strand, within BWI76_RS19185at 3993.743 kb on + strand, within BWI76_RS19185at 3993.890 kb on + strand, within BWI76_RS19185at 3993.915 kb on - strand, within BWI76_RS19185at 3994.031 kb on + strand, within BWI76_RS19185at 3994.236 kb on + strand, within BWI76_RS19185at 3994.294 kb on + strand, within BWI76_RS19185at 3994.373 kb on + strand, within BWI76_RS19185at 3994.438 kb on + strandat 3994.473 kb on + strandat 3994.625 kb on + strand, within BWI76_RS19190at 3994.729 kb on - strand, within BWI76_RS19190at 3994.914 kb on + strand, within BWI76_RS19190at 3995.142 kb on + strand, within BWI76_RS19190at 3995.398 kb on - strandat 3995.504 kb on + strandat 3995.621 kb on + strand, within BWI76_RS19195at 3995.880 kb on - strand, within BWI76_RS19195at 3995.929 kb on + strand, within BWI76_RS19195at 3996.076 kb on - strand, within BWI76_RS19195at 3996.078 kb on - strand, within BWI76_RS19195at 3996.374 kb on + strandat 3996.433 kb on + strand, within BWI76_RS19200

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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3,993,597 + BWI76_RS19185 0.14 -0.1
3,993,731 - BWI76_RS19185 0.27 +0.5
3,993,743 + BWI76_RS19185 0.28 -0.4
3,993,890 + BWI76_RS19185 0.43 -0.2
3,993,915 - BWI76_RS19185 0.45 -0.4
3,994,031 + BWI76_RS19185 0.56 +0.1
3,994,236 + BWI76_RS19185 0.76 -1.1
3,994,294 + BWI76_RS19185 0.82 +0.1
3,994,373 + BWI76_RS19185 0.89 -0.1
3,994,438 + +0.6
3,994,473 + -0.5
3,994,625 + BWI76_RS19190 0.14 -0.5
3,994,729 - BWI76_RS19190 0.25 -0.6
3,994,914 + BWI76_RS19190 0.44 +0.1
3,995,142 + BWI76_RS19190 0.67 -1.7
3,995,398 - +0.8
3,995,504 + -0.8
3,995,621 + BWI76_RS19195 0.19 -0.4
3,995,880 - BWI76_RS19195 0.50 -0.5
3,995,929 + BWI76_RS19195 0.55 +2.1
3,996,076 - BWI76_RS19195 0.73 +0.4
3,996,078 - BWI76_RS19195 0.73 +0.2
3,996,374 + -0.5
3,996,433 + BWI76_RS19200 0.14 -0.0

Or see this region's nucleotide sequence