Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16880

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16870 and BWI76_RS16875 are separated by 107 nucleotidesBWI76_RS16875 and BWI76_RS16880 are separated by 1 nucleotidesBWI76_RS16880 and BWI76_RS16885 are separated by 300 nucleotidesBWI76_RS16885 and BWI76_RS16890 are separated by 33 nucleotides BWI76_RS16870: BWI76_RS16870 - LysR family transcriptional regulator, at 3,498,725 to 3,499,618 _RS16870 BWI76_RS16875: BWI76_RS16875 - putative type I cysteine dioxygenase, at 3,499,726 to 3,500,322 _RS16875 BWI76_RS16880: BWI76_RS16880 - GlpE family protein, at 3,500,324 to 3,501,904 _RS16880 BWI76_RS16885: BWI76_RS16885 - hypothetical protein, at 3,502,205 to 3,502,389 _RS16885 BWI76_RS16890: BWI76_RS16890 - hypothetical protein, at 3,502,423 to 3,503,157 _RS16890 Position (kb) 3500 3501 3502Strain fitness (log2 ratio) -1 0 1at 3499.376 kb on - strand, within BWI76_RS16870at 3499.812 kb on + strand, within BWI76_RS16875at 3499.991 kb on + strand, within BWI76_RS16875at 3500.040 kb on - strand, within BWI76_RS16875at 3500.097 kb on + strand, within BWI76_RS16875at 3500.156 kb on + strand, within BWI76_RS16875at 3500.170 kb on - strandat 3500.658 kb on - strand, within BWI76_RS16880at 3500.753 kb on - strand, within BWI76_RS16880at 3500.885 kb on + strand, within BWI76_RS16880at 3501.077 kb on + strand, within BWI76_RS16880at 3501.351 kb on + strand, within BWI76_RS16880at 3501.675 kb on + strand, within BWI76_RS16880at 3501.873 kb on - strandat 3501.896 kb on - strandat 3502.166 kb on - strandat 3502.434 kb on + strandat 3502.831 kb on - strand, within BWI76_RS16890

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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3,499,376 - BWI76_RS16870 0.73 +1.0
3,499,812 + BWI76_RS16875 0.14 -0.1
3,499,991 + BWI76_RS16875 0.44 +0.1
3,500,040 - BWI76_RS16875 0.53 +0.2
3,500,097 + BWI76_RS16875 0.62 +0.1
3,500,156 + BWI76_RS16875 0.72 -0.9
3,500,170 - -1.6
3,500,658 - BWI76_RS16880 0.21 +0.0
3,500,753 - BWI76_RS16880 0.27 -0.2
3,500,885 + BWI76_RS16880 0.35 -0.2
3,501,077 + BWI76_RS16880 0.48 -1.2
3,501,351 + BWI76_RS16880 0.65 -1.3
3,501,675 + BWI76_RS16880 0.85 -0.4
3,501,873 - +0.2
3,501,896 - +0.2
3,502,166 - -0.1
3,502,434 + +0.3
3,502,831 - BWI76_RS16890 0.56 +0.9

Or see this region's nucleotide sequence