Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15535 and BWI76_RS15540 overlap by 1 nucleotides BWI76_RS15540 and BWI76_RS15545 are separated by 117 nucleotides BWI76_RS15545 and BWI76_RS15550 are separated by 40 nucleotides
BWI76_RS15535: BWI76_RS15535 - hypothetical protein, at 3,255,560 to 3,256,030
_RS15535
BWI76_RS15540: BWI76_RS15540 - hypothetical protein, at 3,256,030 to 3,256,506
_RS15540
BWI76_RS15545: BWI76_RS15545 - hypothetical protein, at 3,256,624 to 3,256,911
_RS15545
BWI76_RS15550: BWI76_RS15550 - hypothetical protein, at 3,256,952 to 3,259,612
_RS15550
Position (kb)
3256
3257 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3255.642 kb on - strand, within BWI76_RS15535 at 3255.854 kb on - strand, within BWI76_RS15535 at 3255.979 kb on + strand, within BWI76_RS15535 at 3255.987 kb on - strand at 3256.015 kb on + strand at 3256.131 kb on + strand, within BWI76_RS15540 at 3256.328 kb on + strand, within BWI76_RS15540 at 3256.375 kb on - strand, within BWI76_RS15540 at 3256.428 kb on + strand, within BWI76_RS15540 at 3256.433 kb on + strand, within BWI76_RS15540 at 3256.433 kb on + strand, within BWI76_RS15540 at 3256.441 kb on - strand, within BWI76_RS15540 at 3256.450 kb on + strand, within BWI76_RS15540 at 3256.623 kb on - strand at 3256.664 kb on + strand, within BWI76_RS15545 at 3256.693 kb on + strand, within BWI76_RS15545 at 3256.708 kb on - strand, within BWI76_RS15545 at 3256.796 kb on + strand, within BWI76_RS15545 at 3256.836 kb on + strand, within BWI76_RS15545 at 3256.944 kb on + strand at 3257.091 kb on - strand at 3257.216 kb on - strand at 3257.334 kb on + strand, within BWI76_RS15550 at 3257.404 kb on - strand, within BWI76_RS15550 at 3257.587 kb on + strand, within BWI76_RS15550 at 3257.632 kb on - strand, within BWI76_RS15550 at 3257.632 kb on - strand, within BWI76_RS15550 at 3257.697 kb on - strand, within BWI76_RS15550
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 3,255,642 - BWI76_RS15535 0.17 -0.8 3,255,854 - BWI76_RS15535 0.62 +1.4 3,255,979 + BWI76_RS15535 0.89 -1.0 3,255,987 - +0.9 3,256,015 + -0.2 3,256,131 + BWI76_RS15540 0.21 -0.6 3,256,328 + BWI76_RS15540 0.62 +1.8 3,256,375 - BWI76_RS15540 0.72 -1.9 3,256,428 + BWI76_RS15540 0.83 -0.4 3,256,433 + BWI76_RS15540 0.84 -1.4 3,256,433 + BWI76_RS15540 0.84 +0.0 3,256,441 - BWI76_RS15540 0.86 -0.1 3,256,450 + BWI76_RS15540 0.88 +0.1 3,256,623 - +0.1 3,256,664 + BWI76_RS15545 0.14 -1.0 3,256,693 + BWI76_RS15545 0.24 +0.1 3,256,708 - BWI76_RS15545 0.29 +0.1 3,256,796 + BWI76_RS15545 0.60 -1.5 3,256,836 + BWI76_RS15545 0.74 -1.2 3,256,944 + +0.5 3,257,091 - -0.6 3,257,216 - -0.3 3,257,334 + BWI76_RS15550 0.14 +0.4 3,257,404 - BWI76_RS15550 0.17 -0.6 3,257,587 + BWI76_RS15550 0.24 -0.2 3,257,632 - BWI76_RS15550 0.26 -1.1 3,257,632 - BWI76_RS15550 0.26 -0.1 3,257,697 - BWI76_RS15550 0.28 -0.3
Or see this region's nucleotide sequence