Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15310 and BWI76_RS15315 are separated by 117 nucleotides BWI76_RS15315 and BWI76_RS15320 are separated by 115 nucleotides BWI76_RS15320 and BWI76_RS15325 are separated by 9 nucleotides
BWI76_RS15310: BWI76_RS15310 - MFS transporter, at 3,206,442 to 3,207,635
_RS15310
BWI76_RS15315: BWI76_RS15315 - DNA-binding protein, at 3,207,753 to 3,208,223
_RS15315
BWI76_RS15320: BWI76_RS15320 - ABC transporter ATP-binding protein, at 3,208,339 to 3,209,037
_RS15320
BWI76_RS15325: BWI76_RS15325 - ABC transporter ATP-binding protein, at 3,209,047 to 3,209,844
_RS15325
Position (kb) 3207
3208
3209 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3206.762 kb on - strand, within BWI76_RS15310 at 3206.764 kb on - strand, within BWI76_RS15310 at 3206.925 kb on - strand, within BWI76_RS15310 at 3207.014 kb on + strand at 3207.022 kb on - strand, within BWI76_RS15310 at 3207.070 kb on + strand, within BWI76_RS15310 at 3207.071 kb on - strand, within BWI76_RS15310 at 3207.073 kb on - strand, within BWI76_RS15310 at 3207.078 kb on - strand, within BWI76_RS15310 at 3207.282 kb on - strand, within BWI76_RS15310 at 3207.338 kb on + strand, within BWI76_RS15310 at 3207.361 kb on + strand, within BWI76_RS15310 at 3207.711 kb on + strand at 3207.730 kb on - strand at 3207.952 kb on + strand, within BWI76_RS15315 at 3207.960 kb on - strand, within BWI76_RS15315 at 3207.987 kb on + strand at 3207.995 kb on - strand, within BWI76_RS15315
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 3,206,762 - BWI76_RS15310 0.27 +2.9 3,206,764 - BWI76_RS15310 0.27 -0.1 3,206,925 - BWI76_RS15310 0.40 -0.9 3,207,014 + -0.1 3,207,022 - BWI76_RS15310 0.49 +0.1 3,207,070 + BWI76_RS15310 0.53 +0.0 3,207,071 - BWI76_RS15310 0.53 +0.3 3,207,073 - BWI76_RS15310 0.53 +0.5 3,207,078 - BWI76_RS15310 0.53 -0.6 3,207,282 - BWI76_RS15310 0.70 +0.4 3,207,338 + BWI76_RS15310 0.75 +0.1 3,207,361 + BWI76_RS15310 0.77 -0.5 3,207,711 + -0.9 3,207,730 - -0.3 3,207,952 + BWI76_RS15315 0.42 -1.9 3,207,960 - BWI76_RS15315 0.44 -1.4 3,207,987 + +0.9 3,207,995 - BWI76_RS15315 0.51 -0.1
Or see this region's nucleotide sequence