Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12555

Experiment: K. M5a1 KLEB22 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12545 and BWI76_RS12550 are separated by 14 nucleotidesBWI76_RS12550 and BWI76_RS12555 overlap by 4 nucleotidesBWI76_RS12555 and BWI76_RS12560 overlap by 4 nucleotidesBWI76_RS12560 and BWI76_RS12565 overlap by 4 nucleotides BWI76_RS12545: BWI76_RS12545 - hypothetical protein, at 2,621,007 to 2,621,966 _RS12545 BWI76_RS12550: BWI76_RS12550 - hypothetical protein, at 2,621,981 to 2,622,514 _RS12550 BWI76_RS12555: BWI76_RS12555 - hypothetical protein, at 2,622,511 to 2,623,035 _RS12555 BWI76_RS12560: BWI76_RS12560 - hypothetical protein, at 2,623,032 to 2,623,517 _RS12560 BWI76_RS12565: BWI76_RS12565 - SAM-dependent methyltransferase, at 2,623,514 to 2,624,734 _RS12565 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -1 0 1 2at 2622.111 kb on + strand, within BWI76_RS12550at 2622.264 kb on - strand, within BWI76_RS12550at 2622.699 kb on - strand, within BWI76_RS12555at 2622.699 kb on - strand, within BWI76_RS12555at 2622.806 kb on + strand, within BWI76_RS12555at 2622.814 kb on - strand, within BWI76_RS12555at 2622.838 kb on - strand, within BWI76_RS12555at 2623.224 kb on + strandat 2623.615 kb on + strandat 2623.691 kb on + strand, within BWI76_RS12565at 2623.995 kb on + strand, within BWI76_RS12565at 2624.000 kb on + strand, within BWI76_RS12565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
remove
2,622,111 + BWI76_RS12550 0.24 +0.4
2,622,264 - BWI76_RS12550 0.53 +1.9
2,622,699 - BWI76_RS12555 0.36 -0.4
2,622,699 - BWI76_RS12555 0.36 -0.9
2,622,806 + BWI76_RS12555 0.56 -0.8
2,622,814 - BWI76_RS12555 0.58 +0.0
2,622,838 - BWI76_RS12555 0.62 -0.9
2,623,224 + +1.5
2,623,615 + -0.1
2,623,691 + BWI76_RS12565 0.14 +0.0
2,623,995 + BWI76_RS12565 0.39 +0.1
2,624,000 + BWI76_RS12565 0.40 -0.1

Or see this region's nucleotide sequence