Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11645

Experiment: K. M5a1 KLEB22 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11640 and BWI76_RS11645 overlap by 28 nucleotidesBWI76_RS11645 and BWI76_RS11650 are separated by 9 nucleotidesBWI76_RS11650 and BWI76_RS11655 overlap by 4 nucleotides BWI76_RS11640: BWI76_RS11640 - ABC transporter membrane protein, at 2,448,851 to 2,450,386 _RS11640 BWI76_RS11645: BWI76_RS11645 - ABC transporter substrate-binding protein, at 2,450,359 to 2,451,519 _RS11645 BWI76_RS11650: BWI76_RS11650 - carboxymuconolactone decarboxylase family protein, at 2,451,529 to 2,452,080 _RS11650 BWI76_RS11655: BWI76_RS11655 - TVP38/TMEM64 family protein, at 2,452,077 to 2,452,775 _RS11655 Position (kb) 2450 2451 2452Strain fitness (log2 ratio) -1 0 1at 2449.978 kb on + strand, within BWI76_RS11640at 2449.986 kb on - strand, within BWI76_RS11640at 2450.218 kb on - strand, within BWI76_RS11640at 2450.364 kb on - strandat 2450.459 kb on - strandat 2450.526 kb on - strand, within BWI76_RS11645at 2450.721 kb on + strand, within BWI76_RS11645at 2450.729 kb on + strand, within BWI76_RS11645at 2452.180 kb on - strand, within BWI76_RS11655at 2452.253 kb on + strand, within BWI76_RS11655at 2452.253 kb on + strand, within BWI76_RS11655at 2452.303 kb on + strand, within BWI76_RS11655at 2452.454 kb on + strand, within BWI76_RS11655at 2452.477 kb on + strand, within BWI76_RS11655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
remove
2,449,978 + BWI76_RS11640 0.73 +0.4
2,449,986 - BWI76_RS11640 0.74 +0.7
2,450,218 - BWI76_RS11640 0.89 +0.0
2,450,364 - +1.0
2,450,459 - -0.1
2,450,526 - BWI76_RS11645 0.14 -0.8
2,450,721 + BWI76_RS11645 0.31 -1.2
2,450,729 + BWI76_RS11645 0.32 -0.4
2,452,180 - BWI76_RS11655 0.15 -0.4
2,452,253 + BWI76_RS11655 0.25 -0.3
2,452,253 + BWI76_RS11655 0.25 -0.1
2,452,303 + BWI76_RS11655 0.32 +0.1
2,452,454 + BWI76_RS11655 0.54 +1.0
2,452,477 + BWI76_RS11655 0.57 +0.1

Or see this region's nucleotide sequence