Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10875

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10865 and BWI76_RS10870 are separated by 145 nucleotidesBWI76_RS10870 and BWI76_RS10875 are separated by 20 nucleotidesBWI76_RS10875 and BWI76_RS10880 are separated by 114 nucleotides BWI76_RS10865: BWI76_RS10865 - tRNA-Ser, at 2,297,892 to 2,297,979 _RS10865 BWI76_RS10870: BWI76_RS10870 - nicotinamidase, at 2,298,125 to 2,298,802 _RS10870 BWI76_RS10875: BWI76_RS10875 - quercetin 2,3-dioxygenase, at 2,298,823 to 2,299,683 _RS10875 BWI76_RS10880: BWI76_RS10880 - LysR family transcriptional regulator, at 2,299,798 to 2,300,703 _RS10880 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -2 -1 0 1at 2298.029 kb on - strandat 2298.309 kb on - strand, within BWI76_RS10870at 2298.319 kb on - strand, within BWI76_RS10870at 2298.713 kb on - strand, within BWI76_RS10870at 2298.951 kb on + strand, within BWI76_RS10875at 2299.164 kb on - strand, within BWI76_RS10875at 2299.447 kb on + strand, within BWI76_RS10875at 2300.075 kb on + strand, within BWI76_RS10880

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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2,298,029 - +0.3
2,298,309 - BWI76_RS10870 0.27 -0.8
2,298,319 - BWI76_RS10870 0.29 +0.2
2,298,713 - BWI76_RS10870 0.87 -0.3
2,298,951 + BWI76_RS10875 0.15 -0.9
2,299,164 - BWI76_RS10875 0.40 +0.3
2,299,447 + BWI76_RS10875 0.72 -2.3
2,300,075 + BWI76_RS10880 0.31 -0.0

Or see this region's nucleotide sequence