Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05635

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05630 and BWI76_RS05635 are separated by 139 nucleotidesBWI76_RS05635 and BWI76_RS05640 are separated by 154 nucleotides BWI76_RS05630: BWI76_RS05630 - TonB-dependent siderophore receptor, at 1,180,553 to 1,182,643 _RS05630 BWI76_RS05635: BWI76_RS05635 - AraC family transcriptional regulator, at 1,182,783 to 1,183,775 _RS05635 BWI76_RS05640: BWI76_RS05640 - GntR family transcriptional regulator, at 1,183,930 to 1,184,706 _RS05640 Position (kb) 1182 1183 1184Strain fitness (log2 ratio) -1 0 1at 1181.992 kb on + strand, within BWI76_RS05630at 1182.082 kb on + strand, within BWI76_RS05630at 1182.090 kb on - strand, within BWI76_RS05630at 1182.219 kb on - strand, within BWI76_RS05630at 1182.270 kb on - strand, within BWI76_RS05630at 1182.315 kb on + strand, within BWI76_RS05630at 1182.700 kb on + strandat 1182.702 kb on + strandat 1182.708 kb on - strandat 1182.708 kb on - strandat 1182.708 kb on - strandat 1182.900 kb on - strand, within BWI76_RS05635at 1182.971 kb on - strand, within BWI76_RS05635at 1183.036 kb on - strand, within BWI76_RS05635at 1183.148 kb on + strand, within BWI76_RS05635at 1183.228 kb on - strand, within BWI76_RS05635at 1183.559 kb on - strand, within BWI76_RS05635at 1183.592 kb on + strand, within BWI76_RS05635at 1183.689 kb on - strandat 1184.124 kb on - strand, within BWI76_RS05640at 1184.124 kb on - strand, within BWI76_RS05640at 1184.205 kb on + strand, within BWI76_RS05640

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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1,181,992 + BWI76_RS05630 0.69 -0.9
1,182,082 + BWI76_RS05630 0.73 -0.7
1,182,090 - BWI76_RS05630 0.74 -1.0
1,182,219 - BWI76_RS05630 0.80 -0.4
1,182,270 - BWI76_RS05630 0.82 +0.5
1,182,315 + BWI76_RS05630 0.84 -1.1
1,182,700 + -0.2
1,182,702 + +0.8
1,182,708 - -0.6
1,182,708 - +0.1
1,182,708 - +0.6
1,182,900 - BWI76_RS05635 0.12 -1.4
1,182,971 - BWI76_RS05635 0.19 -0.5
1,183,036 - BWI76_RS05635 0.25 -0.5
1,183,148 + BWI76_RS05635 0.37 -0.4
1,183,228 - BWI76_RS05635 0.45 -1.5
1,183,559 - BWI76_RS05635 0.78 -0.3
1,183,592 + BWI76_RS05635 0.81 +0.1
1,183,689 - +0.2
1,184,124 - BWI76_RS05640 0.25 -0.6
1,184,124 - BWI76_RS05640 0.25 +0.7
1,184,205 + BWI76_RS05640 0.35 -1.4

Or see this region's nucleotide sequence