Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03835 and BWI76_RS03840 are separated by 9 nucleotides BWI76_RS03840 and BWI76_RS03845 are separated by 70 nucleotides BWI76_RS03845 and BWI76_RS03850 are separated by 10 nucleotides
BWI76_RS03835: BWI76_RS03835 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 793,832 to 794,722
_RS03835
BWI76_RS03840: BWI76_RS03840 - 4-hydroxyphenylacetate permease, at 794,732 to 796,108
_RS03840
BWI76_RS03845: BWI76_RS03845 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 796,179 to 796,971
_RS03845
BWI76_RS03850: BWI76_RS03850 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 796,982 to 797,785
_RS03850
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -1
0
1
2
3 at 794.012 kb on + strand, within BWI76_RS03835 at 794.108 kb on - strand, within BWI76_RS03835 at 794.159 kb on + strand, within BWI76_RS03835 at 794.411 kb on + strand, within BWI76_RS03835 at 794.537 kb on - strand, within BWI76_RS03835 at 794.824 kb on - strand at 794.873 kb on + strand, within BWI76_RS03840 at 795.009 kb on + strand, within BWI76_RS03840 at 795.017 kb on - strand, within BWI76_RS03840 at 795.104 kb on + strand, within BWI76_RS03840 at 795.315 kb on + strand, within BWI76_RS03840 at 795.351 kb on - strand, within BWI76_RS03840 at 795.656 kb on - strand, within BWI76_RS03840 at 795.700 kb on + strand, within BWI76_RS03840 at 795.724 kb on + strand, within BWI76_RS03840 at 795.745 kb on - strand, within BWI76_RS03840 at 795.875 kb on - strand, within BWI76_RS03840 at 795.875 kb on - strand, within BWI76_RS03840 at 796.106 kb on + strand at 796.161 kb on + strand at 796.299 kb on + strand, within BWI76_RS03845 at 796.307 kb on - strand, within BWI76_RS03845 at 796.401 kb on + strand, within BWI76_RS03845 at 796.553 kb on + strand, within BWI76_RS03845 at 796.780 kb on + strand, within BWI76_RS03845 at 796.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 794,012 + BWI76_RS03835 0.20 +0.1 794,108 - BWI76_RS03835 0.31 +1.3 794,159 + BWI76_RS03835 0.37 +0.5 794,411 + BWI76_RS03835 0.65 +0.3 794,537 - BWI76_RS03835 0.79 +0.9 794,824 - -0.0 794,873 + BWI76_RS03840 0.10 +1.3 795,009 + BWI76_RS03840 0.20 -0.4 795,017 - BWI76_RS03840 0.21 +3.3 795,104 + BWI76_RS03840 0.27 +0.3 795,315 + BWI76_RS03840 0.42 -0.4 795,351 - BWI76_RS03840 0.45 +0.4 795,656 - BWI76_RS03840 0.67 -0.2 795,700 + BWI76_RS03840 0.70 +0.4 795,724 + BWI76_RS03840 0.72 +0.5 795,745 - BWI76_RS03840 0.74 -0.1 795,875 - BWI76_RS03840 0.83 +0.7 795,875 - BWI76_RS03840 0.83 -0.1 796,106 + +3.2 796,161 + -0.1 796,299 + BWI76_RS03845 0.15 -0.3 796,307 - BWI76_RS03845 0.16 +0.2 796,401 + BWI76_RS03845 0.28 -0.1 796,553 + BWI76_RS03845 0.47 -0.9 796,780 + BWI76_RS03845 0.76 -0.6 796,949 - +1.0
Or see this region's nucleotide sequence