Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00170 and BWI76_RS00175 are separated by 345 nucleotides BWI76_RS00175 and BWI76_RS00180 are separated by 417 nucleotides BWI76_RS00180 and BWI76_RS00185 are separated by 20 nucleotides
BWI76_RS00170: BWI76_RS00170 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 34,140 to 35,510
_RS00170
BWI76_RS00175: BWI76_RS00175 - pectate disaccharide-lyase, at 35,856 to 38,027
_RS00175
BWI76_RS00180: BWI76_RS00180 - F0F1 ATP synthase subunit epsilon, at 38,445 to 38,864
_RS00180
BWI76_RS00185: BWI76_RS00185 - ATP synthase subunit beta, at 38,885 to 40,267
_RS00185
Position (kb) 35
36
37
38
39 Strain fitness (log2 ratio) -1
0
1
2 at 35.618 kb on - strand at 35.651 kb on + strand at 35.651 kb on + strand at 35.871 kb on + strand at 35.926 kb on - strand at 35.958 kb on - strand at 36.079 kb on - strand, within BWI76_RS00175 at 36.181 kb on - strand, within BWI76_RS00175 at 36.313 kb on - strand, within BWI76_RS00175 at 36.853 kb on - strand, within BWI76_RS00175 at 36.853 kb on - strand, within BWI76_RS00175 at 36.853 kb on - strand, within BWI76_RS00175 at 36.853 kb on - strand, within BWI76_RS00175 at 36.853 kb on - strand, within BWI76_RS00175 at 36.964 kb on + strand, within BWI76_RS00175 at 36.974 kb on - strand at 36.974 kb on - strand, within BWI76_RS00175 at 36.977 kb on - strand, within BWI76_RS00175 at 37.166 kb on + strand, within BWI76_RS00175 at 37.282 kb on + strand, within BWI76_RS00175 at 37.301 kb on + strand, within BWI76_RS00175 at 37.368 kb on - strand, within BWI76_RS00175 at 37.527 kb on - strand, within BWI76_RS00175 at 37.639 kb on + strand, within BWI76_RS00175 at 37.816 kb on + strand at 37.816 kb on + strand at 38.001 kb on - strand at 38.550 kb on - strand, within BWI76_RS00180 at 38.550 kb on - strand, within BWI76_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 35,618 - +0.5 35,651 + +1.1 35,651 + -0.3 35,871 + -0.0 35,926 - +0.5 35,958 - +0.8 36,079 - BWI76_RS00175 0.10 +1.1 36,181 - BWI76_RS00175 0.15 +0.3 36,313 - BWI76_RS00175 0.21 -0.3 36,853 - BWI76_RS00175 0.46 +0.7 36,853 - BWI76_RS00175 0.46 +0.5 36,853 - BWI76_RS00175 0.46 +2.7 36,853 - BWI76_RS00175 0.46 +1.2 36,853 - BWI76_RS00175 0.46 -0.5 36,964 + BWI76_RS00175 0.51 -0.1 36,974 - -1.3 36,974 - BWI76_RS00175 0.51 +0.7 36,977 - BWI76_RS00175 0.52 +0.4 37,166 + BWI76_RS00175 0.60 +0.4 37,282 + BWI76_RS00175 0.66 -1.2 37,301 + BWI76_RS00175 0.67 +0.6 37,368 - BWI76_RS00175 0.70 +0.0 37,527 - BWI76_RS00175 0.77 +1.1 37,639 + BWI76_RS00175 0.82 +1.0 37,816 + +2.4 37,816 + +0.2 38,001 - +0.6 38,550 - BWI76_RS00180 0.25 +1.0 38,550 - BWI76_RS00180 0.25 +0.5
Or see this region's nucleotide sequence