Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23955 and BWI76_RS23960 are separated by 121 nucleotides BWI76_RS23960 and BWI76_RS23965 are separated by 90 nucleotides BWI76_RS23965 and BWI76_RS23970 are separated by 150 nucleotides
BWI76_RS23955: BWI76_RS23955 - LysR family transcriptional regulator, at 5,000,363 to 5,001,259
_RS23955
BWI76_RS23960: BWI76_RS23960 - oxidative stress defense protein, at 5,001,381 to 5,002,148
_RS23960
BWI76_RS23965: BWI76_RS23965 - arginine exporter protein, at 5,002,239 to 5,002,874
_RS23965
BWI76_RS23970: BWI76_RS23970 - mechanosensitive ion channel protein MscS, at 5,003,025 to 5,003,882
_RS23970
Position (kb) 5002
5003 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5001.474 kb on - strand, within BWI76_RS23960 at 5001.603 kb on - strand, within BWI76_RS23960 at 5001.644 kb on - strand, within BWI76_RS23960 at 5001.702 kb on - strand, within BWI76_RS23960 at 5001.769 kb on + strand, within BWI76_RS23960 at 5001.873 kb on - strand, within BWI76_RS23960 at 5001.936 kb on - strand, within BWI76_RS23960 at 5002.184 kb on - strand at 5002.252 kb on + strand at 5002.355 kb on + strand, within BWI76_RS23965 at 5002.435 kb on - strand, within BWI76_RS23965 at 5003.009 kb on + strand at 5003.220 kb on - strand, within BWI76_RS23970 at 5003.415 kb on + strand, within BWI76_RS23970 at 5003.415 kb on + strand, within BWI76_RS23970 at 5003.538 kb on - strand, within BWI76_RS23970 at 5003.800 kb on + strand at 5003.813 kb on - strand at 5003.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 5,001,474 - BWI76_RS23960 0.12 -1.0 5,001,603 - BWI76_RS23960 0.29 -0.0 5,001,644 - BWI76_RS23960 0.34 -0.3 5,001,702 - BWI76_RS23960 0.42 +1.9 5,001,769 + BWI76_RS23960 0.51 +1.1 5,001,873 - BWI76_RS23960 0.64 +0.1 5,001,936 - BWI76_RS23960 0.72 -0.1 5,002,184 - +0.3 5,002,252 + -2.2 5,002,355 + BWI76_RS23965 0.18 -0.3 5,002,435 - BWI76_RS23965 0.31 -1.8 5,003,009 + +0.5 5,003,220 - BWI76_RS23970 0.23 -0.8 5,003,415 + BWI76_RS23970 0.45 +0.7 5,003,415 + BWI76_RS23970 0.45 +1.3 5,003,538 - BWI76_RS23970 0.60 +0.2 5,003,800 + -0.5 5,003,813 - +0.1 5,003,834 + +0.3
Or see this region's nucleotide sequence