Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16995

Experiment: K. M5a1 KLEB22 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16985 and BWI76_RS16990 overlap by 26 nucleotidesBWI76_RS16990 and BWI76_RS16995 are separated by 16 nucleotidesBWI76_RS16995 and BWI76_RS17000 are separated by 2 nucleotidesBWI76_RS17000 and BWI76_RS17005 are separated by 442 nucleotides BWI76_RS16985: BWI76_RS16985 - signal peptide peptidase SppA, at 3,522,317 to 3,523,591 _RS16985 BWI76_RS16990: BWI76_RS16990 - ABC transporter ATP-binding protein, at 3,523,566 to 3,524,312 _RS16990 BWI76_RS16995: BWI76_RS16995 - Fe-S cluster assembly protein SufB, at 3,524,329 to 3,525,816 _RS16995 BWI76_RS17000: BWI76_RS17000 - Fe-S cluster assembly scaffold SufA, at 3,525,819 to 3,526,196 _RS17000 BWI76_RS17005: BWI76_RS17005 - hypothetical protein, at 3,526,639 to 3,527,151 _RS17005 Position (kb) 3524 3525 3526Strain fitness (log2 ratio) -1 0 1at 3523.572 kb on - strandat 3523.977 kb on - strand, within BWI76_RS16990at 3524.182 kb on - strand, within BWI76_RS16990at 3524.257 kb on - strandat 3524.529 kb on - strand, within BWI76_RS16995at 3524.607 kb on + strand, within BWI76_RS16995at 3524.757 kb on + strand, within BWI76_RS16995at 3524.899 kb on - strand, within BWI76_RS16995at 3525.230 kb on + strand, within BWI76_RS16995at 3525.336 kb on - strand, within BWI76_RS16995at 3525.491 kb on + strand, within BWI76_RS16995at 3525.532 kb on + strand, within BWI76_RS16995at 3525.545 kb on - strand, within BWI76_RS16995at 3525.897 kb on + strand, within BWI76_RS17000at 3525.998 kb on - strand, within BWI76_RS17000at 3526.143 kb on - strand, within BWI76_RS17000at 3526.205 kb on + strandat 3526.459 kb on + strandat 3526.630 kb on - strandat 3526.671 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1
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3,523,572 - -0.1
3,523,977 - BWI76_RS16990 0.55 +0.0
3,524,182 - BWI76_RS16990 0.82 -0.6
3,524,257 - -1.3
3,524,529 - BWI76_RS16995 0.13 -0.1
3,524,607 + BWI76_RS16995 0.19 -1.4
3,524,757 + BWI76_RS16995 0.29 -0.6
3,524,899 - BWI76_RS16995 0.38 -0.3
3,525,230 + BWI76_RS16995 0.61 -0.3
3,525,336 - BWI76_RS16995 0.68 -0.0
3,525,491 + BWI76_RS16995 0.78 -0.5
3,525,532 + BWI76_RS16995 0.81 -0.9
3,525,545 - BWI76_RS16995 0.82 -1.1
3,525,897 + BWI76_RS17000 0.21 -0.6
3,525,998 - BWI76_RS17000 0.47 +0.3
3,526,143 - BWI76_RS17000 0.86 -0.1
3,526,205 + +0.3
3,526,459 + +0.0
3,526,630 - -0.7
3,526,671 + -0.7

Or see this region's nucleotide sequence