Experiment: K. M5a1 KLEB22 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16985 and BWI76_RS16990 overlap by 26 nucleotides BWI76_RS16990 and BWI76_RS16995 are separated by 16 nucleotides BWI76_RS16995 and BWI76_RS17000 are separated by 2 nucleotides BWI76_RS17000 and BWI76_RS17005 are separated by 442 nucleotides
BWI76_RS16985: BWI76_RS16985 - signal peptide peptidase SppA, at 3,522,317 to 3,523,591
_RS16985
BWI76_RS16990: BWI76_RS16990 - ABC transporter ATP-binding protein, at 3,523,566 to 3,524,312
_RS16990
BWI76_RS16995: BWI76_RS16995 - Fe-S cluster assembly protein SufB, at 3,524,329 to 3,525,816
_RS16995
BWI76_RS17000: BWI76_RS17000 - Fe-S cluster assembly scaffold SufA, at 3,525,819 to 3,526,196
_RS17000
BWI76_RS17005: BWI76_RS17005 - hypothetical protein, at 3,526,639 to 3,527,151
_RS17005
Position (kb)
3524
3525
3526 Strain fitness (log2 ratio)
-1
0
1 at 3523.572 kb on - strand at 3523.977 kb on - strand, within BWI76_RS16990 at 3524.182 kb on - strand, within BWI76_RS16990 at 3524.257 kb on - strand at 3524.529 kb on - strand, within BWI76_RS16995 at 3524.607 kb on + strand, within BWI76_RS16995 at 3524.757 kb on + strand, within BWI76_RS16995 at 3524.899 kb on - strand, within BWI76_RS16995 at 3525.230 kb on + strand, within BWI76_RS16995 at 3525.336 kb on - strand, within BWI76_RS16995 at 3525.491 kb on + strand, within BWI76_RS16995 at 3525.532 kb on + strand, within BWI76_RS16995 at 3525.545 kb on - strand, within BWI76_RS16995 at 3525.897 kb on + strand, within BWI76_RS17000 at 3525.998 kb on - strand, within BWI76_RS17000 at 3526.143 kb on - strand, within BWI76_RS17000 at 3526.205 kb on + strand at 3526.459 kb on + strand at 3526.630 kb on - strand at 3526.671 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB22 MOI 1 remove 3,523,572 - -0.1 3,523,977 - BWI76_RS16990 0.55 +0.0 3,524,182 - BWI76_RS16990 0.82 -0.6 3,524,257 - -1.3 3,524,529 - BWI76_RS16995 0.13 -0.1 3,524,607 + BWI76_RS16995 0.19 -1.4 3,524,757 + BWI76_RS16995 0.29 -0.6 3,524,899 - BWI76_RS16995 0.38 -0.3 3,525,230 + BWI76_RS16995 0.61 -0.3 3,525,336 - BWI76_RS16995 0.68 -0.0 3,525,491 + BWI76_RS16995 0.78 -0.5 3,525,532 + BWI76_RS16995 0.81 -0.9 3,525,545 - BWI76_RS16995 0.82 -1.1 3,525,897 + BWI76_RS17000 0.21 -0.6 3,525,998 - BWI76_RS17000 0.47 +0.3 3,526,143 - BWI76_RS17000 0.86 -0.1 3,526,205 + +0.3 3,526,459 + +0.0 3,526,630 - -0.7 3,526,671 + -0.7
Or see this region's nucleotide sequence